Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1255 ATGGCTCCTTCTTCTGATATCAATCATCTTTCTCATCCATGTATATATGGGGATTATGTGTCTTCACACCCAGAGAGAAAATCTGGTTTCATGAAATGGCTAAGTAAGCTATTCAAAGGTGGGTCCAATAGAGGAAGGAGTGGTCGTCATCATTATGATCCTGCAGAGGAAGGCATGTCTTGGCGTGCTCCATCTAGAGCTTTGGATGAACGTGCAAGAGCTCAGAAGGAGAAAGAGGATTTAGGCCATGCAATGTCACTTTCTTCTGCCGAAGATATGAAGAGACCAAATGCCCATCAAGGATATAGGTGGGGGGAAGAAAATGATGAAGATTATGGAAAGGCACTTCATGATAACTTTAACTCATCTGCACACCCTCCTTATGCTCCTGCACCATTCTATCCCAATGAATATAGAAGACTATGTGGTGGCTGCAACCAGGAGATAATCTATGGAAATTGTTTAGGCTGCATGGATACTTATTTTCATCCAGACTGCTTTCGATGCCACTCTTGTCGCTATCCCATTACCGAACGCGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAATCTTGTTTTAAAGAGTTGACACATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCAATAAATGCTGCTGGTTTGATTGAGTATAGATGCCACCCCTTTTGGTCTCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGATTAGAGCCTCGGAATATAAAATATTATCGACTCGAAGATGGACGAAGCTTGTGCTTAGAGTGCATGGAATCTGCTATAATGGACACTGGTGATTGTCAGCCTCTATACCATTCAATCAGAGATTATTATGAAGGAATGCATATGAGAATTGATCAGCAAGTTCCTATGCTTCTTGTTGAAAGAGAAGCACTTAATGATGCTATTGTTGGAGAGAAGACTGGATTTCATCATTTGCCAGAAACAAGGGGTTTATGCCTTTCAGAAGAACAAACTGTAACTAGTATACATAGAAGGCCAAGAATTGGAGGCCATAGACTTATTGGGATGAGAACTCAACCTCAAAAGCTGATAAGAAAATGTGAAGTTACCGCAATTCTTGTTCTATATGGTCTACCAAGATTACTAACAGGTGCTATACTTGCCCATGAGTTGATGCATGCATGGTTACGCCTTAAAGGTTATCGCAATCTCAGTCCTGAAGTAGAAGAAGGCATTTGTCAGGTTCTGTCATATATGTGGCTTGAGTCAGAAGTTATGCCAACAAGCTCTCATTGCATGGCATCAACTTCCACAGGTGCTTCTTCTTCCTCATCCTCTTCATCCTCAAAGAAAGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAATTCTTCAAGAATCAAATTGTCAATGATTCTTCACCAGCTTATGGTGGTGGTTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTCTACGTAGTACTCTTGAACATATTCGTTTGACTGGTTTTTTCCCTATGTAA 1524 0.4022 MAPSSDINHLSHPCIYGDYVSSHPERKSGFMKWLSKLFKGGSNRGRSGRHHYDPAEEGMSWRAPSRALDERARAQKEKEDLGHAMSLSSAEDMKRPNAHQGYRWGEENDEDYGKALHDNFNSSAHPPYAPAPFYPNEYRRLCGGCNQEIIYGNCLGCMDTYFHPDCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPRNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMHMRIDQQVPMLLVEREALNDAIVGEKTGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLSPEVEEGICQVLSYMWLESEVMPTSSHCMASTSTGASSSSSSSSSKKGAKSHVENKLGEFFKNQIVNDSSPAYGGGFRAANEAVNKYGLRSTLEHIRLTGFFPM* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1255 507 ProSiteProfiles LIM domain profile. 140 200 IPR001781 -
Mal8g1255 507 MobiDBLite consensus disorder prediction 41 92 - -
Mal8g1255 507 SMART lim_4 141 193 IPR001781 -
Mal8g1255 507 ProSitePatterns LIM zinc-binding domain signature. 142 176 IPR001781 -
Mal8g1255 507 CDD LIM_DA1 142 194 - -
Mal8g1255 507 Gene3D Cysteine Rich Protein 129 199 - -
Mal8g1255 507 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 167 - -
Mal8g1255 507 PANTHER PROTEIN DA1-RELATED 2 20 507 IPR045218 -
Mal8g1255 507 Pfam LIM domain 142 195 IPR001781 -
Mal8g1255 507 MobiDBLite consensus disorder prediction 431 451 - -
Mal8g1255 507 MobiDBLite consensus disorder prediction 431 452 - -
Mal8g1255 507 MobiDBLite consensus disorder prediction 46 85 - -
Mal8g1255 507 Pfam Protein DA1 291 502 IPR022087 -
Mal8g1255 507 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1255 Mal-Chr8 23055363 23060148 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal8g1255 DA1-like 1e-100 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1255 - - gmx:100784976 924.85