Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1186 ATGCAGGTAAATGAGGACAAGTTTCATGTTGTAGACATAGACAACAATGTCTGTCACCGGAGTAATGAACGATGTTCTAACTCCGGTGACCGGTTAGATGAGGATCAAAGGTGTGAGATTGTGGGAGTGTCTGAAAAACAAAGAGAGTCCATTGATTCATCTGAATCAGTTGAATCAGAATGTTCTGTGGAGTTGGATCTGGATGATGTAGTAGTTTCTGATGTTAAGGTGCATTTGGATAAGGTTGAGAGGGATTGTAGGATTTGTCATCTTAGTATGGATATGACAAATCATGAATCTGGAATTCCTATGGAGCTTGGATGTTCTTGTAAAGAGGATTTGGCTGCTGCTCATAAACATTGTGCTGAGGCTTGGTTCAAGATTAAAGGCAACAAAACTTGTGAAATCTGTGGATCAATTGCGCACAATGTCGCCGGTTCTATTGAAGTTCAAATGACAGAACAGTTTAATGAATCAAGTGATCCCTCCATTGTACCACCAACTGGACCATCACCGCCATCAGAAACTCGAAATTTTTGGCAGGGACATCGGTTTTTGAATTTCCTTCTAGCATGTATGGTTTTCGCCTTTGTCATATCATGGCTTTTTCACTTTAATGTTCCCTCTTGA 630 0.4048 MQVNEDKFHVVDIDNNVCHRSNERCSNSGDRLDEDQRCEIVGVSEKQRESIDSSESVESECSVELDLDDVVVSDVKVHLDKVERDCRICHLSMDMTNHESGIPMELGCSCKEDLAAAHKHCAEAWFKIKGNKTCEICGSIAHNVAGSIEVQMTEQFNESSDPSIVPPTGPSPPSETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1186 209 MobiDBLite consensus disorder prediction 157 176 - -
Mal8g1186 209 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 9 209 - -
Mal8g1186 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 146 IPR013083 -
Mal8g1186 209 SUPERFAMILY RING/U-box 83 140 - -
Mal8g1186 209 CDD RING_CH-C4HC3_MARCH 86 138 - -
Mal8g1186 209 SMART ringv_2 85 138 IPR011016 GO:0008270
Mal8g1186 209 Pfam RING-variant domain 86 137 IPR011016 GO:0008270
Mal8g1186 209 PANTHER ZINC FINGER, RING-CH-TYPE 9 209 - -
Mal8g1186 209 ProSiteProfiles Zinc finger RING-CH-type profile. 78 144 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1186 Mal-Chr8 18423107 18425253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1186 42 209 C3H Transcription Factor Family AT5G05830 63.158 3.57e-70 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1186 - - mtr:MTR_5g081560 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g2778 2 36520866 36523345 Mal8g1186 8 18423107 18425253 ECH
Mal3g2108 3 87165814 87168900 Mal8g1186 8 18423107 18425253 ECH
Mal8g1186 8 18423107 18425253 Mal8g1186 8 18423107 18425253 ECH