Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1173 ATGGAGAGTCGAAAGGAGAAAAGGAAGGCAATGAAAAAATTGAAGAGAAAGGAGAGAAGGAAAGAGATTGCTGAGAAGGAACGTTTGGAGGAAGAATCTCGCCTTAACGATCCCGAAGAGCTGAGAAAGAGATTACTCTTGGAGCAGTTAGAGGCCGAGAGAATCGAAAGAGACAGGATCGCCTTCGAAGAGAGGGAGAAGGCTTGGATCATCAAACAACAACAAAAACAACTATCTCAACACCATATCAACAACATTGATAATAACAACGATCTCCAAGAAGAAGAAGAAGAAGATGATGGTCCTCCGGAGATTATTTGGCTTGGAAATGAAATTATTATAAAAAAGAAGAACCCCGACCCCCTTCTACTCCACAACCATCAGGAGCAGCACGAGCATTGCGATGGTGATGATAACAATAACAGAACAACAAGACCTACATCAAATCCCTTTCCCCCGGAGAATGTTGTTACTCAACAACTATCCAATTTCGGAACTGAACTGGACAAATCTCACTGTCCTTTTCATTTTAAAACTGCAGCATGTCGTTTCGGTGACCGATGTAGCAGAGTTCATTATTACCCCGATAAGTCCTGCACTCTTCTCATCAGAAATATGTACAATGGTTCTGGCCTTGCTTGGGATCAAGATGAAGGCCTTGAGTATACAGATGAGGAGGTTGAACACTGTTTTGAAGAGTTTTATGAAGATGTTCACACAGAGTTCCTGAAGTTTGGAGAAATTGTGAACTTCAAGGTGTGTAAAAACGGTTCATTTCACTTGCGAGGAAATGTCTACGTACAGTATAAGTTGTTGGATTCTGCTCTGCTTGCTTATAACTCAGTTAATGGTCGCTACTTTGCTGGGAAACAGGTGAGCTGTAAGTTTGTTAATTTAACAAGATGGAAGGTTGCCATTTGTGGCGAGTATATGAAATCAGGTTACAAGACTTGTTCCCATGGAACAGCTTGCAATTTTATCCACTGTTTCCGTAATCCTGGTGGCGACTATGAATGGGCAGATTCTGACAAACAACCCCCAAAATTTTGGGTAAAGGAGATGGTTGCTTTATTTGGTCATTCTGATGATTGTGAGACCTCAAGGGTCCATGGAAATTTTAGTGCGCTGAAGCACTCCAGCAATGTCCTAAAAACAGATTCTGACAGGTATCACTCAAAAAGATCAAGATCTAGGGAGATGGGTCAGTTAAATGGTGGTCGTTCTAGTAGAAGAAAACAGGAAGATGAAAGAAAACAAAGAACTCCTGATGAGGAGGGGAATACCAACTTTAAAGACAACCATAAAAGAAAATACAGGAACAAAACTCCTGATTCTGATTCGGATAGGGAAGGAGAGATGGAAACACAACATGATTACTCTAGGAAAAGCTCGAGACACAGAAGATCTGGTCTTCAAGACTACTGTGATGACTGTGAGAATGAAAATGACAAAGTTGATGGAGGTTGGTCTCAGAGAGACGGTGACCGACGAGCACATCATGACAAAAAGAAGAGATTGAAATACCAGAAGAAATTGGATTCCACCAATGGAGACACTAAGAATATCCTACACACCTACGACAGAAACAAAAATGCTTACAAGACTCTGATTGCCGCTGAATATGTTGGTGTCAAAGTTGAATTGGCTCCTGATTTTCAGATGGGTGTTTCCAACAAAACTCCTCAATTTCTCAACATGAACCCTCTTCGAAAGTTGCCCGATTGGGTGAAAGCAATTTGTTTGGATCATCTCTCTTTGATCAGGGAAGAAATAAACATGAATAGATGGCCTAAAAAGGCCCACATCGACCAGTGGATTGATTTCTCTTCTATGGAGATTGATGCCAATATTATGAAGTTGTACTTACCAAATCTTGGATTTGCCCCCTACTCTCCTCCAGAGGCTGCAATTTCTTCATTGAAGAGAGCATTTGAGGCTTTGAACACACACCTTTCCCACAATACCTACCTTGTTGGGCATTCTGTCACCCTTGCTGACATTATAGCAACATCCAACTTGTATTTAGGTTTCTCTAAACTCTTAGTTAAGAGCTTCACCTCGGAGTTTCCTCATGTTAAGAGATACTTTTGGAACTTGGTCAACCAGCCAAATTTCCGAAAGATTTTAGGCCAGAGGATTGATCTGGCTCGCAAGTATGCTTTTGGAAAGATGCTTATAATTGGATCAGAGCCTCCATTTAAGGTGAATGGGTTGTGGCTTTTCCGTGGACAATACATTCCAAAGTTTGTCATGGATGAATGCTATGACATGGAGCTCTATGAGTGGACCAAGGTTGACATCTCTGATGAAGCTCAGAAAGAGTGTGGCAGTCAGATGATTGAAGATGTTGAACCATTTGAGGGGGGGGGGGCTCTTTTGGATGGATGCCAAGTGCTTTAA 2400 0.4158 MESRKEKRKAMKKLKRKERRKEIAEKERLEEESRLNDPEELRKRLLLEQLEAERIERDRIAFEEREKAWIIKQQQKQLSQHHINNIDNNNDLQEEEEEDDGPPEIIWLGNEIIIKKKNPDPLLLHNHQEQHEHCDGDDNNNRTTRPTSNPFPPENVVTQQLSNFGTELDKSHCPFHFKTAACRFGDRCSRVHYYPDKSCTLLIRNMYNGSGLAWDQDEGLEYTDEEVEHCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNFIHCFRNPGGDYEWADSDKQPPKFWVKEMVALFGHSDDCETSRVHGNFSALKHSSNVLKTDSDRYHSKRSRSREMGQLNGGRSSRRKQEDERKQRTPDEEGNTNFKDNHKRKYRNKTPDSDSDREGEMETQHDYSRKSSRHRRSGLQDYCDDCENENDKVDGGWSQRDGDRRAHHDKKKRLKYQKKLDSTNGDTKNILHTYDRNKNAYKTLIAAEYVGVKVELAPDFQMGVSNKTPQFLNMNPLRKLPDWVKAICLDHLSLIREEINMNRWPKKAHIDQWIDFSSMEIDANIMKLYLPNLGFAPYSPPEAAISSLKRAFEALNTHLSHNTYLVGHSVTLADIIATSNLYLGFSKLLVKSFTSEFPHVKRYFWNLVNQPNFRKILGQRIDLARKYAFGKMLIIGSEPPFKVNGLWLFRGQYIPKFVMDECYDMELYEWTKVDISDEAQKECGSQMIEDVEPFEGGGALLDGCQVL* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1173 799 SMART EF1G_2 641 745 IPR001662 GO:0003746|GO:0006414
Mal8g1173 799 MobiDBLite consensus disorder prediction 1 37 - -
Mal8g1173 799 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 4 527 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mal8g1173 799 SUPERFAMILY GST C-terminal domain-like 598 711 IPR036282 -
Mal8g1173 799 Coils Coil 7 34 - -
Mal8g1173 799 Gene3D - 198 297 IPR012677 -
Mal8g1173 799 MobiDBLite consensus disorder prediction 384 506 - -
Mal8g1173 799 MobiDBLite consensus disorder prediction 129 154 - -
Mal8g1173 799 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 699 798 IPR036433 GO:0003746|GO:0006414
Mal8g1173 799 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 329 IPR000571 GO:0046872
Mal8g1173 799 ProSiteProfiles Zinc finger C3H1-type profile. 167 195 IPR000571 GO:0046872
Mal8g1173 799 Gene3D Glutaredoxin 519 581 - -
Mal8g1173 799 MobiDBLite consensus disorder prediction 18 37 - -
Mal8g1173 799 CDD RRM_U2AFBPL 200 298 - -
Mal8g1173 799 Gene3D - 594 698 - -
Mal8g1173 799 SUPERFAMILY RNA-binding domain, RBD 231 299 IPR035979 GO:0003676
Mal8g1173 799 PANTHER ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 4 527 - -
Mal8g1173 799 SMART rrm2_1 212 295 IPR003954 GO:0003676
Mal8g1173 799 ProSiteProfiles Zinc finger C3H1-type profile. 301 331 IPR000571 GO:0046872
Mal8g1173 799 MobiDBLite consensus disorder prediction 408 497 - -
Mal8g1173 799 Pfam Elongation factor 1 gamma, conserved domain 706 744 IPR001662 GO:0003746|GO:0006414
Mal8g1173 799 PRINTS U2 auxiliary factor small subunit signature 192 212 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mal8g1173 799 PRINTS U2 auxiliary factor small subunit signature 321 333 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mal8g1173 799 PRINTS U2 auxiliary factor small subunit signature 173 192 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mal8g1173 799 PRINTS U2 auxiliary factor small subunit signature 228 243 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mal8g1173 799 PRINTS U2 auxiliary factor small subunit signature 283 307 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mal8g1173 799 PRINTS U2 auxiliary factor small subunit signature 256 278 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mal8g1173 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 299 IPR000504 GO:0003723
Mal8g1173 799 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 595 721 IPR010987 -
Mal8g1173 799 MobiDBLite consensus disorder prediction 384 400 - -
Mal8g1173 799 SMART c3hfinal6 168 194 IPR000571 GO:0046872
Mal8g1173 799 SMART c3hfinal6 301 330 IPR000571 GO:0046872
Mal8g1173 799 Pfam Glutathione S-transferase, C-terminal domain 639 703 IPR004046 -
Mal8g1173 799 CDD GST_C_EF1Bgamma_like 599 710 - -
Mal8g1173 799 SUPERFAMILY eEF1-gamma domain 694 787 IPR036433 GO:0003746|GO:0006414
Mal8g1173 799 SUPERFAMILY Thioredoxin-like 519 573 IPR036249 -
Mal8g1173 799 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 711 799 IPR001662 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1173 Mal-Chr8 18279239 18291347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1173 522 795 Eukaryotic Initiation Factors Gene Family AT1G09640 55.594 5.05e-98 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal8g1173 EF1G 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1173 K24273 - cam:101495256 644.81