Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1171 ATGGATTTGGAAACCCTTTATGCTCCTTATTTTATGTTGGATACAAATTGGCTTGTTGAAGAGAGTCACCAAACAGAATGGAGTAGAGAAGATAACAAGAAATTTGAAAGTGCTCTTGCTATATATGATAAGGATACACCAGATAGATGGTTTAAGGTTGCTGAGATGATTCCTGGTAAGACTGTTTTTGATGTGATTAAGCAGTATAGAGAATTGGAAGAAGATGTGAGTGAAATTGAAGCTGGAAATGTTCCAATTCCTGGTTATCTTGCTTCTTCTTTCACTTTTGAGGTTGTTGAAAAACAGAACTATGATGGAAATAGAAGAAGACATGTTACTGTTAGGGGTTCTGATCATGAGAGGAAGAAAGGTGTTCCTTGGACTGAAGAGGAACATAGACGTTTTCTGATGGGACTTCTAAAGTATGGTAAAGGCGATTGGAGAAACATCTCTCGCAATTTCGTCGTGACAAAGACTCCAACACAAGTAGCAAGTCATGCACAAAAGTACTACATAAGGCAAAAGGTTTCTTCTGGAGGCAAAGATAAAAGAAGACCAAGCATTCATGATATAACTACTGTTAGTCTCACAGAAACTTCTTCTGCATCAGATAAAAACAAGCCTCTATTAGTCAATGTGTCTCCTATGCAGCAGAAAATGGGATGGACTAATAGCCACTACAATGATGGATCACTACAAGGACAGGATCTCTATGACTGCTCTTTTCATGAGGCTTATGCTAAGCTGAAAGTTTCCGGTTTCGCAACGGCTTCGAGAGACTTCAATAAGGGAGCTGTTTTTGGTATTCATGCACTGTAA 819 0.3871 MDLETLYAPYFMLDTNWLVEESHQTEWSREDNKKFESALAIYDKDTPDRWFKVAEMIPGKTVFDVIKQYRELEEDVSEIEAGNVPIPGYLASSFTFEVVEKQNYDGNRRRHVTVRGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGKDKRRPSIHDITTVSLTETSSASDKNKPLLVNVSPMQQKMGWTNSHYNDGSLQGQDLYDCSFHEAYAKLKVSGFATASRDFNKGAVFGIHAL* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1171 272 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 220 IPR043363 -
Mal8g1171 272 CDD SANT 126 170 IPR001005 -
Mal8g1171 272 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Mal8g1171 272 Gene3D - 19 86 - -
Mal8g1171 272 SMART sant 123 173 IPR001005 -
Mal8g1171 272 SMART sant 23 75 IPR001005 -
Mal8g1171 272 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Mal8g1171 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Mal8g1171 272 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
Mal8g1171 272 Gene3D - 125 176 - -
Mal8g1171 272 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Mal8g1171 272 ProSiteProfiles SANT domain profile. 22 77 IPR017884 -
Mal8g1171 272 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 220 - -
Mal8g1171 272 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Mal8g1171 272 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Mal8g1171 272 CDD SANT 26 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1171 Mal-Chr8 18262409 18263963 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal8g1171 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1171 - - cam:101492144 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g2200 3 90017519 90019273 Mal8g1171 8 18262409 18263963 ECH
Mal8g2050 8 42384291 42385919 Mal8g1171 8 18262409 18263963 ECH
Mal2g3347 2 50212009 50213507 Mal8g1171 8 18262409 18263963 ECH
Mal8g1171 8 18262409 18263963 Mal8g1171 8 18262409 18263963 ECH