Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1153 ATGTCTCCTCAGCAACCCAGCCGTGTTGATCCAAAAATCTGGCAGTGCTGCGTTGGCTCATCAGTGAAAATACCTAAACTGCATTCTAAAGTTTACTACTATCCAAAAGGTTACTTGGAACATGGCTGCCATTCCCCCATGAGTACTGAAATGCTTGCCCTTTTCAATCAGTGCATTCCATCCTATCCCTGCGTCGTCTCCGGCGTTGATCTCTTTGCTGATCGTCAAACCGACGAAGTCTTTACAAAACTAATCCTAACTCCCATCACCAACAGAAGTGTTTACGAACCTCAGGAGGTTCGTGAAGATGTTGGTGATGGGGTTATTTCCTCTGGCAAGACTCTCACCCGGTCTGATGCTAATAACGGCGGTGCATTCTCCGTACCTTGTGAATGCGCGAAGTTGATCTTCCCCCCGCTTGACTTCAAGTTCGATATGCCATCTCAGGAACTTCAGGTCACTGACATTCACGGCGAAGTTTGGAACTTTCGCCACACCTACCGCGGAACTCCCAAGCGACACCTGATCACCACTAACTGGAGTCAGTTTGTTGATAAGAAGAAACTCACTCGCGGTGATTCCGTCGTTTTCATGAAAAATTCTGACGGAAAGATCTACGTCGGTATCCGCAGGCACAAGTCTGGTGTTGCTGCCAAGATAACGGAAAAATCCGTTATGGAGGCAGCAAAATTGGCGGATAAGAAGATGGCTTTTGAAGTTGTGTATTATCCGACGGCAGAAGGTTGGAATGATTTTGTTGTTGATGCTAAGGTTGTCGAGGATGCAATGAAGATCAAGTGGAATACTGGAATGAGAGTTAAACTTTGTTTGAAGACTGATGAATCTTCAAAAAGATGCTCTAATATTCAAGGGACAATATCTGCTCTATCTGCTCCTTCTCATCATCCATGGCGCATGCTTCAGGTTAACTGGGATGAACCTGGACTCTCACAAAATCCAAGCCAAGTATGTCCTTGGCAGGTTGAACTTATTTCCAACATCCCAACATTGCCTCTACATTTTCATCCAACAAAGAAATTTAAAACTGCTCAAGGTTCTTACTTATCAACTAATACTAAGGGACCTTCCATTCCACCGATAGAGTTCGATTTTCTATCAAAGAGATCCAGGCCAAATCTTTTTTCTGCGTCAACATCTTCGAACTTTTTGAATGATAAGGGTATTGATTTTGTTGAGAATCATTCAATGACAGGGATAGGTAATGTGTCAACTAAGCTAAACATAAGCACTCCTATATCCAATGATTTGTCACCTCATAACAGTAATATTTTGAACTCCTTTGATGAAAAAATTGAAGGTACCCACAGCTGCAAAACCAAAAAGGATAATCCTCGCCCAGTTAAGCTATTTGGTGTAACCATAGGTTTTGTAGTAAGGGATTCACACAATTCTGATATCAATGGAGAAGATGGTTGCAAGGGATGCAAAGACGATGGTTCCAGATAA 1467 0.4281 MSPQQPSRVDPKIWQCCVGSSVKIPKLHSKVYYYPKGYLEHGCHSPMSTEMLALFNQCIPSYPCVVSGVDLFADRQTDEVFTKLILTPITNRSVYEPQEVREDVGDGVISSGKTLTRSDANNGGAFSVPCECAKLIFPPLDFKFDMPSQELQVTDIHGEVWNFRHTYRGTPKRHLITTNWSQFVDKKKLTRGDSVVFMKNSDGKIYVGIRRHKSGVAAKITEKSVMEAAKLADKKMAFEVVYYPTAEGWNDFVVDAKVVEDAMKIKWNTGMRVKLCLKTDESSKRCSNIQGTISALSAPSHHPWRMLQVNWDEPGLSQNPSQVCPWQVELISNIPTLPLHFHPTKKFKTAQGSYLSTNTKGPSIPPIEFDFLSKRSRPNLFSASTSSNFLNDKGIDFVENHSMTGIGNVSTKLNISTPISNDLSPHNSNILNSFDEKIEGTHSCKTKKDNPRPVKLFGVTIGFVVRDSHNSDINGEDGCKGCKDDGSR* 489
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1153 488 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 377 484 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal8g1153 488 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 220 361 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal8g1153 488 Gene3D - 112 213 IPR015300 -
Mal8g1153 488 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 214 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal8g1153 488 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Mal8g1153 488 Pfam B3 DNA binding domain 113 212 IPR003340 GO:0003677
Mal8g1153 488 Pfam Auxin response factor 228 307 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mal8g1153 488 SUPERFAMILY DNA-binding pseudobarrel domain 112 212 IPR015300 -
Mal8g1153 488 PANTHER AUXIN RESPONSE FACTOR 220 361 - -
Mal8g1153 488 PANTHER AUXIN RESPONSE FACTOR 5 214 - -
Mal8g1153 488 PANTHER AUXIN RESPONSE FACTOR 377 484 - -
Mal8g1153 488 CDD B3_DNA 113 211 IPR003340 GO:0003677
Mal8g1153 488 Gene3D - 266 335 - -
Mal8g1153 488 SMART B3_2 113 213 IPR003340 GO:0003677
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mal8g1153 Mal-Chr8 17939102 17941078 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1153 8 488 B3 DNA Binding Superfamily AT1G77850 36.577 6.17e-104 321
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mal8g1153 B3 4.4e-18 CL0405