Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1119 ATGACGGACGGTCATCTCTTCAACAATATCACCCTCGGCGGCCGCGGTGGCACTAATCCGGGGCAGATAAAGATATATTCTGGGGGAATTTTATGGAAGAGACAGGGGGGTGGGAAATCAATTGAAGTTGACAAAGCTGACATAGTGAGCGTGACATGGATGAAGGTTCCAAAGACTAATCAACTTGGTGTTCAGATCAAAGATGGGTTGTTCTACAAATTCACTGGATTTCGTGATCAGGACGTTGTAAGTTTGACCAGTTATTTCCAAAACACCTTTGGAATAGCTGTAAAGGAGAAGCAGCTTTCTGTTAGTGGGCGCAATTGGGGAGAAGTTGATTTAAATGGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTTCCTTTAGCGGATGTCTCGCAAACTAACCTTCAAGGGAAAAATGATGTGATCTTGGAGTTCCATGTGGATGACACAACCGGAGCCAATGAGAAAGATTCCTTGATGGAGATAAGTTTCCATATACCGAATTCAAACACCCAGTTTGTTGGTGATGAAAATTGCCCCCCTGCTCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTTGGTGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCAATCCTTACACCAAGGGGAAGATATAGTGTCGAGTTACACCTGTCATTCTTGCGGCTTCAAGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTGTAGTTCGACTATTTTTACTTCCTAAGTCTAATCAGCCACATACCTTCGTCGTTATTAGTCTCGACCCCCCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTGATGCAGTTCGAAACTGATTATGTGGTTGAAAGTGAATTGGCATTAAGTGAAGATCTTTATAACTCCAAGTACAAAGACAGATTGGAGCTGTCTTATAAGGGGCTCATCCATGAAGTGTTCACCACAGTATTACGTGGCTTGTCCGGGGCCAAAGTTACTAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCCGTTAAATCATCTCTGAAAGCTGAAGATGGAATTTTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCCACTCTTATTACTCATGAAGAGATTGACTATGTGGAGTTTGAGCGACATGCTGCTGGTGGGTCAAATATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGACCAAGAGCATCTCTTCCGTAATATTCAGAGAAATGAGTACCACAATTTGTATGGTTTTATCAGTTCAAAGGGCTTGAAAATTATGAATTTAGGAGATGCCCAACCAACTGCTGGTGTGGCTAAGGTTCTTGAGAGTGATGATGATGATGCTGTTGATCCACATCTTGAGCGCATCAGAAATGAAGCTGGTGAAGATGAAAGTGACGAGGAGGATGAAGACTTTGTTGCCGAAAAGGATGATTCTGGGTCTCCTACTGATGATTCTGGGGCAGATGATTCTGATGCTAGCCAAGGTGGTGATGAGAAAGAGAAACCTGCCAAAAAGGAACCAAAGAAGGATCTGTCTTCTAAGGCATCTGCTTCTACTTCGAAGAAGAAACCAAAAGATGCGGATGGAGATGGAAAGAAGAGAAAACAGAAGAAGAAAAGGGATCCAAATGCACCCAAGAGGGCATTAACTGGATTCATGTTCTTTTCTCAAATGGAAAGAGAGAATCTAAAGAAAAGTAATCCTGGGATTTCATTTACGGATGTGGCAAAATTACTTGGAGAGAATTGGAAAAAGATGTCAGTTGAGGAGAAGGAGCCATACGAGGCAAAAGCCCGTGTCGATAAAAAACGTTATCAGGATGAAAGAAGTGACTACAAGAATTCACAAGCACAACCGATGAATATTGATTCAGGAAATGAATCTGACAGTGCCTAA 1938 0.4185 MTDGHLFNNITLGGRGGTNPGQIKIYSGGILWKRQGGGKSIEVDKADIVSVTWMKVPKTNQLGVQIKDGLFYKFTGFRDQDVVSLTSYFQNTFGIAVKEKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVPLADVSQTNLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENCPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTLYPHIVMQFETDYVVESELALSEDLYNSKYKDRLELSYKGLIHEVFTTVLRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLITHEEIDYVEFERHAAGGSNMHYFDLLIRLKSDQEHLFRNIQRNEYHNLYGFISSKGLKIMNLGDAQPTAGVAKVLESDDDDAVDPHLERIRNEAGEDESDEEDEDFVAEKDDSGSPTDDSGADDSDASQGGDEKEKPAKKEPKKDLSSKASASTSKKKPKDADGDGKKRKQKKKRDPNAPKRALTGFMFFSQMERENLKKSNPGISFTDVAKLLGENWKKMSVEEKEPYEAKARVDKKRYQDERSDYKNSQAQPMNIDSGNESDSA* 646
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1119 645 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Mal8g1119 645 SMART Rtt106_2 348 441 IPR013719 -
Mal8g1119 645 MobiDBLite consensus disorder prediction 506 549 - -
Mal8g1119 645 MobiDBLite consensus disorder prediction 474 488 - -
Mal8g1119 645 Pfam POB3-like N-terminal PH domain 7 98 IPR035417 -
Mal8g1119 645 MobiDBLite consensus disorder prediction 600 645 - -
Mal8g1119 645 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Mal8g1119 645 MobiDBLite consensus disorder prediction 600 625 - -
Mal8g1119 645 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 1 643 - -
Mal8g1119 645 MobiDBLite consensus disorder prediction 469 567 - -
Mal8g1119 645 Gene3D - 199 338 - -
Mal8g1119 645 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 643 - -
Mal8g1119 645 CDD PH2_SSRP1-like 342 441 - -
Mal8g1119 645 CDD PH1_SSRP1-like 207 340 - -
Mal8g1119 645 Pfam HMG (high mobility group) box 559 627 IPR009071 -
Mal8g1119 645 Gene3D - 1 93 IPR011993 -
Mal8g1119 645 SUPERFAMILY HMG-box 546 629 IPR036910 -
Mal8g1119 645 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Mal8g1119 645 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Mal8g1119 645 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Mal8g1119 645 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Mal8g1119 645 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Mal8g1119 645 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Mal8g1119 645 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Mal8g1119 645 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Mal8g1119 645 Gene3D - 339 448 IPR011993 -
Mal8g1119 645 SUPERFAMILY PH domain-like 206 440 - -
Mal8g1119 645 SMART hmgende2 558 628 IPR009071 -
Mal8g1119 645 CDD HMGB-UBF_HMG-box 559 624 - -
Mal8g1119 645 MobiDBLite consensus disorder prediction 626 645 - -
Mal8g1119 645 Gene3D High mobility group box domain 543 641 IPR036910 -
Mal8g1119 645 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 559 627 IPR009071 -
Mal8g1119 645 Gene3D - 95 179 IPR038167 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mal8g1119 Mal-Chr8 17178256 17183655 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1119 555 627 ARID Transcription Factor Family AT1G04880 38.356 1.17e-08 55.8
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mal8g1119 POB3_N 1.4e-22 CL0266
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1119 K09272 - gmx:100780190 1083.17