Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1101 ATGTGCAGTGGTTCAAAAAGTAAACTTTCTTCATCAGACTGTGCCATGGAGGATAAGCTTCAAAAGGGTATCCACAACTCTTCAATCTTGCTTGAATTGTCTGCATCTGATGATTTTGATACTTTCAAAAGAGAAGTAGATGAGAAGGGTTTGGATGTGAATGAGGAAGGATTTTGGTATGGTAGAAGAATTGGATCGAAGAAGATGGAATCCGAAATGAGGACTCCTCTCATGATTGCTTCATTGTTTGGAAGCACTAGGGTGGTTGAGTATATTATTTCGACAGGAAAGGTTGATGTCAACGGAGTTTGTGGTTCCGATATGGCCACTGCTCTTCATTTTGCTGTTGCTGGTGGTTCTGAATTTTCGCTTGAGGTTGTCAAGCTCTTGCTTGATGCCGGTGCAGATGCTGATTGTCTTGATGCTAGTGGTAATAAACCGGTTGATCTGATTGCGCCTGCCTTTAATACTTTGTCCAAATCGCGTAGGAAGGTGTTGGAGTTGTTTCTGAGAGGCGAGGTAAGTGCTGAACTCATCGAAGGGGAGATGGATGCTCCTTTCTCATTGAAAAAAGAAGGTGGTGATAAGAAAGAGTTTCCTATTGATATATCGTTGCCAGACATAAACAACGGTGTATATGGATCAGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCATGCTCGAGGGCTTACTCCCACGATTGGACCGAGTGTCCTTTCGTTCATCCAGGTGAGAATGCAAGGAGGAGAGACCCAAGGAAATATCCTTACAGTTGTGTTCCCTGCCCGGAGTTTCGCAAAGGTTCTTGCCAGAAAGGTGATTCGTGTGAGTACGCACACGGTGTTTTCGAGTCATGGCTACATCCTGCACAATACCGAACAAGGCTTTGCAAGGACGAGACTGGCTGCAACAGAAAAGTATGCTTCTTTGCTCACAGACCCGAAGAGCTGCGCCCCGTGTATGCTTCCACTGGGTCAGCTATGCCTTCACCAAAATCTTACTCAGCTAGTGCGATTGACATGACATCGATGAGTCCGTTGTCTCTTAGCTCCTCATCTTTGCCTATGTCAACGGTTTCAACACCACCCATGTCTCCCTTGGCAGGTTCATCATCTCCCAAGAGTGGAAATATGTGGCAGAACAAATTAAACCTTACTCCACCATCATTGCAGCTCCCTGGTAGCCGGTTGAAGAGTGCTTTGAGTGCAAGGGATCTCGATCTTGAGATGGAACTGCTCGGTCTGGATAGCCCTCGTCGTCAGCAACAGCAGCACCAACAACAACAACAATTGATTGAAGAAATTGCCAGAATATCATCCCCATCTTTCCGGAACAGCGAATTCAACAGGATTGCTGATTTGAATCCAACTAACCTTGATGACCTATTAGCATCAGCTGATCCTAATTTACTATCTCAACTACATGGACTTTCCATGCAACCTTCAACACCAACACAACAGATGCAATCTCCAAGTGCGATGCAAATGCGCCAAAACATGAACATGAGCGCAAACATGAACATGAACCACCTTCGCTCAAGTTATCCATCCAATAATATGCCTTCCTCTCCAGTAAGGAAACCCTCACCATATGGATTTGATTCATCGGCTGCCGTAGCAGCTGCAGTGATGAATTCCAGGTCTGCTGCCTTTGCAAAGCAGCGCAGTCAAAGTTTCATTGATCGCGGCGCAGCAACTCACCATCTCGGGCTTTCTCCTCCTTCCAACCCTTCCTGTAGAGTGTCATCTGGCCTTTCGGATTGGGGTTCCCCAACCGGGAAACTCGATTGGGGTGTTAACGGAGACGAGCTAAACAAGCTGAGGAAATCAGCTTCTTTTGGGTTCAGAAATAATGGGGCAGCAGCACCAACTACACCTCAACATGCCGAGCCTGATGTCTCTTGGGTTAATTCATTGGTCAAGGATGTTCCATCTGAGAATTCCGGCATATATGGTGCTGAGAATATGCGGCAGCTGCAGCAATATGATCTGAGTCGAGACGTGCTTCCACCATGGGTGGAGCAGATGTACAAAGAGCAGGAGCAGATGGTAGCATGA 2061 0.4634 MCSGSKSKLSSSDCAMEDKLQKGIHNSSILLELSASDDFDTFKREVDEKGLDVNEEGFWYGRRIGSKKMESEMRTPLMIASLFGSTRVVEYIISTGKVDVNGVCGSDMATALHFAVAGGSEFSLEVVKLLLDAGADADCLDASGNKPVDLIAPAFNTLSKSRRKVLELFLRGEVSAELIEGEMDAPFSLKKEGGDKKEFPIDISLPDINNGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHRPEELRPVYASTGSAMPSPKSYSASAIDMTSMSPLSLSSSSLPMSTVSTPPMSPLAGSSSPKSGNMWQNKLNLTPPSLQLPGSRLKSALSARDLDLEMELLGLDSPRRQQQQHQQQQQLIEEIARISSPSFRNSEFNRIADLNPTNLDDLLASADPNLLSQLHGLSMQPSTPTQQMQSPSAMQMRQNMNMSANMNMNHLRSSYPSNNMPSSPVRKPSPYGFDSSAAVAAAVMNSRSAAFAKQRSQSFIDRGAATHHLGLSPPSNPSCRVSSGLSDWGSPTGKLDWGVNGDELNKLRKSASFGFRNNGAAAPTTPQHAEPDVSWVNSLVKDVPSENSGIYGAENMRQLQQYDLSRDVLPPWVEQMYKEQEQMVA* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1101 686 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 282 IPR000571 GO:0046872
Mal8g1101 686 Gene3D - 258 320 - -
Mal8g1101 686 MobiDBLite consensus disorder prediction 572 586 - -
Mal8g1101 686 SUPERFAMILY Ankyrin repeat 25 156 IPR036770 -
Mal8g1101 686 MobiDBLite consensus disorder prediction 351 392 - -
Mal8g1101 686 Gene3D - 25 169 IPR036770 -
Mal8g1101 686 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 17 685 - -
Mal8g1101 686 Pfam Ankyrin repeats (3 copies) 72 138 IPR002110 GO:0005515
Mal8g1101 686 ProSiteProfiles Zinc finger C3H1-type profile. 257 284 IPR000571 GO:0046872
Mal8g1101 686 PANTHER UNKEMPT FAMILY MEMBER 17 685 IPR045234 -
Mal8g1101 686 SMART ANK_2a 107 139 IPR002110 GO:0005515
Mal8g1101 686 SMART ANK_2a 72 102 IPR002110 GO:0005515
Mal8g1101 686 SMART c3hfinal6 292 315 IPR000571 GO:0046872
Mal8g1101 686 SMART c3hfinal6 257 283 IPR000571 GO:0046872
Mal8g1101 686 ProSiteProfiles Ankyrin repeat region circular profile. 107 141 - -
Mal8g1101 686 MobiDBLite consensus disorder prediction 567 586 - -
Mal8g1101 686 ProSiteProfiles Ankyrin repeat profile. 107 142 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1101 Mal-Chr8 16929264 16931324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1101 25 681 C2H2 Transcription Factor Family AT5G12850 39.698 9.10e-141 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal8g1101 Ank_2 4.4e-07 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g2708 2 35210132 35211685 Mal8g1101 8 16929264 16931324 ECH
Mal8g1101 8 16929264 16931324 Mal8g1101 8 16929264 16931324 ECH