Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1089 ATGAAGGGTTATGAACCAAGATCAAGTTCCTCTTGTGCAGCCTGCAAATTTCTGAAAAGAAGATGCATACCAAATTGTATATTTGCACCATACTTTCGCTCCGACGAGTGCAAGAAATTCGCGAAAGTGCACAAAGTATTTGGAGCAAGCAATGTGAGCAAGATTCTGATTGAAGTGCCAGAGGAACAAAGGGAAGAAACTGTGAATTCTTTGGCTTATGAAGCAGATGCAAGGCTTAGAGATCCTGTTTACGGATGCATAGGTGCTATAGCACTTTTGCAAAGGAAGATGGTTGAACTTCAACATGATCTTGCCATTGCTAAGGATCGTCTTGCTCGTTGCACCGCGGCTGCTGCTACTCCTTCTTCTTCTTTTTCCAATGATATGATGAATTCCAATGTTAGTTTGCCACCTTTTCCTGAGTTTTTCACTTGCAGTGATTTCAGTGATAATTTTAGTCACAGTTCTTCGTCACAATCGTTTAGTCGAAATGAAACTGTCGATGATTTCGTTCAAATTCCTTACATATTTTGA 534 0.4026 MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREETVNSLAYEADARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARCTAAAATPSSSFSNDMMNSNVSLPPFPEFFTCSDFSDNFSHSSSSQSFSRNETVDDFVQIPYIF* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1089 177 Coils Coil 90 110 - -
Mal8g1089 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 171 - -
Mal8g1089 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 171 - -
Mal8g1089 177 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Mal8g1089 177 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1089 Mal-Chr8 16715863 16716396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1089 1 111 AS2 family AT3G11090 80.180 2.65e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mal8g1089 LOB 1e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g1089 8 16715863 16716396 Mal8g1089 8 16715863 16716396 ECH