Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1067 ATGGGTGCTCCTGTTTATGATCAAAGTTTGAAGGTTTCTATTGTGCCAATGGAATCAAGTAAAAAGAGGAAAACTAGGAGTAGAGGAAAAGGGACTAAATCTGTGGCTGAGATTCTAGCAAAGTGGAAGGAATACAATGAGAAACTATATAAAGATGATGGTAAACCGAAGCGTAAAGCACCAGCTAAAGGTTCAAAGAAAGGGTGTATGAAAGGTAAAGGAGGACCTCAAAACTCGGAGAATAAGTATCGAGGTGTTAGACAGAGGACTTGGGGGAAATGGGTTGCTGAAATTAGGGAACCAAATAGAGGGAGTAGACTTTGGTTAGGTACTTTTCCGACAGCTCAGGAGGCTGCTCTTGCTTATGATTATGCTGCTAGAGCTATGTATGGTCCTTCTGCGCGACTTAACTTCCCGGATATCGCGGATTATAGTTCTATTCAGGAATATTTGAAGGATTCTTCATCAGCTGCTGCTGCTGCTAGCTGTTGTTCTTCAGTGGCAACAACTCCTGCAACATCTGAGACAACAACTGTATCTGGTCATTCTGAGGTTTGTGCTGCTGAGGATGTTAAGGAGATACCTAAGTTCCCTCTCAATATGAACAATACTGTTGATGTTTGTCAGAAGGGTTATTATGAAGCTTCATCTCCAACAAGTAGAATGAAGCTTGAGCCGAAGGATGAGCCTGTTGATATCATAGGCCTTGGTGGTGGTGAAATCCAAGATGCAAATTCAGAAGGAACACAAACACATGATGCTGTGCAGGTTGGAGAGGGTGTGAGTAATGACCAGATGGATTTTTCATGGATGGATAACTTTGACATCACTGATGACTACTTGAAGAGTTTTTCGATGGATGAGTTCTTTCATGTGGATGATTTCTTTCAGGTGGATGAGCTTCTGGGGCATATAGATAATAATCCAATTGATGAATCTGGGGTGATGCAAAGTTTGGATTTTGGACAAATGGGTCTTCCTGAAGAGAGTAATAATCCTCAGGCTGGGACTACTTCAAGCTTCTTTTATGAATTGGAAAATCCTGATGCTATGCTGTTGGGAAGTTTGCCTCACATGGAACACACAGCATCAGGTGTTGATTATGGATTACCTCTGAACTTCAATGGTGGAGTAGAAGATACACCGTTTCTTGATTTGGATTATGATCTAAATCACGATTCAGGAGGAATGAAAGGAAGGAAGAATGATTAG 1212 0.415 MGAPVYDQSLKVSIVPMESSKKRKTRSRGKGTKSVAEILAKWKEYNEKLYKDDGKPKRKAPAKGSKKGCMKGKGGPQNSENKYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAQEAALAYDYAARAMYGPSARLNFPDIADYSSIQEYLKDSSSAAAAASCCSSVATTPATSETTTVSGHSEVCAAEDVKEIPKFPLNMNNTVDVCQKGYYEASSPTSRMKLEPKDEPVDIIGLGGGEIQDANSEGTQTHDAVQVGEGVSNDQMDFSWMDNFDITDDYLKSFSMDEFFHVDDFFQVDELLGHIDNNPIDESGVMQSLDFGQMGLPEESNNPQAGTTSSFFYELENPDAMLLGSLPHMEHTASGVDYGLPLNFNGGVEDTPFLDLDYDLNHDSGGMKGRKND* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1067 403 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Mal8g1067 403 Gene3D AP2/ERF domain 81 140 IPR036955 GO:0003700|GO:0006355
Mal8g1067 403 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 370 - -
Mal8g1067 403 CDD AP2 82 140 IPR001471 GO:0003700|GO:0006355
Mal8g1067 403 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 17 370 - -
Mal8g1067 403 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Mal8g1067 403 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Mal8g1067 403 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Mal8g1067 403 MobiDBLite consensus disorder prediction 1 33 - -
Mal8g1067 403 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Mal8g1067 403 MobiDBLite consensus disorder prediction 50 85 - -
Mal8g1067 403 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1067 Mal-Chr8 16394712 16395923 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1067 21 398 AP2-EREBP Transcription Factor Family AT2G40340 38.131 2.67e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal8g1067 AP2 7.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1067 - K09286 mtr:MTR_5g083340 679.478