Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mal8g0988 | ATGTTGATTGTTAGAACACCAATAAATGAAAAGTATTTTCTTAAGACAGGAACATGTAAGTATGGATCGACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGCACCCGTAGTTTTCAATACTTTAGGTCTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGTGCTTGTAAGTTTGGTGTTGCATGCAAGTTTCATCATCCACAGCAGGCAGCGGCTTCCCTTGGAGCTTACCCGGTGGCTGCTTCCCCTCCCTCCGCAACTGTTACTTCATCAGGTTTTCCATATGCTGGTGGGTTTCCTGCATGGTCAATGCCGAGAATGTCGTATTTATCTGGACAAGGCATTCAATCTTATGTGCCTCCTTTTCTGCCTACTACACAAGGCGTTATGCCTGCGCTGAGCTGGAGCAACTACATGGGAAGTATTAACCCTGCTATGCCTACCGGTTTTCTCGGATCTAATCTTGTCTACGACTATATGAATCCGGCTGGAGAGACACTTTCTGGTGGACAGGTAATGAATTCAACTCTTCCAGATAGACCTGAGCAACCAGATTGTAAATACTTTATGAGCACTGGAACATGCAAATATGGATCTGATTGCAAGTTCCACCACCCTAAAGAAAGAATAGCCCAAACTTTATCAATTAATCCACTTGGCCTTCCTATGAGACCTGTAAGTGCATTTTCTGCTTTATTCTTAGGGTTCCTATGTTCTAGCTTCTTTTGTGAAAAAATCAATCACTTTTTTTTTTAA | 780 | 0.4244 | MLIVRTPINEKYFLKTGTCKYGSTCKYHHPKDRRGAAPVVFNTLGLPMRQEEKSCPYYMRTGACKFGVACKFHHPQQAAASLGAYPVAASPPSATVTSSGFPYAGGFPAWSMPRMSYLSGQGIQSYVPPFLPTTQGVMPALSWSNYMGSINPAMPTGFLGSNLVYDYMNPAGETLSGGQVMNSTLPDRPEQPDCKYFMSTGTCKYGSDCKFHHPKERIAQTLSINPLGLPMRPVSAFSALFLGFLCSSFFCEKINHFFF* | 260 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mal8g0988 | 259 | PANTHER | PROTEIN PHOSPHATASE RELATED | 11 | 236 | - | - | |
Mal8g0988 | 259 | SUPERFAMILY | CCCH zinc finger | 48 | 77 | IPR036855 | GO:0046872 | |
Mal8g0988 | 259 | SUPERFAMILY | CCCH zinc finger | 191 | 217 | IPR036855 | GO:0046872 | |
Mal8g0988 | 259 | ProSiteProfiles | Zinc finger C3H1-type profile. | 188 | 216 | IPR000571 | GO:0046872 | |
Mal8g0988 | 259 | ProSiteProfiles | Zinc finger C3H1-type profile. | 11 | 32 | IPR000571 | GO:0046872 | |
Mal8g0988 | 259 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 | 11 | 236 | - | - | |
Mal8g0988 | 259 | Gene3D | - | 183 | 252 | - | - | |
Mal8g0988 | 259 | Gene3D | - | 11 | 84 | - | - | |
Mal8g0988 | 259 | SMART | c3hfinal6 | 188 | 215 | IPR000571 | GO:0046872 | |
Mal8g0988 | 259 | SMART | c3hfinal6 | 51 | 76 | IPR000571 | GO:0046872 | |
Mal8g0988 | 259 | SMART | c3hfinal6 | 9 | 31 | IPR000571 | GO:0046872 | |
Mal8g0988 | 259 | ProSiteProfiles | Zinc finger C3H1-type profile. | 49 | 77 | IPR000571 | GO:0046872 | |
Mal8g0988 | 259 | SUPERFAMILY | CCCH zinc finger | 12 | 33 | IPR036855 | GO:0046872 | |
Mal8g0988 | 259 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 191 | 215 | IPR000571 | GO:0046872 | |
Mal8g0988 | 259 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 11 | 31 | IPR000571 | GO:0046872 | |
Mal8g0988 | 259 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 53 | 76 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mal8g0988 | Mal-Chr8 | 14727304 | 14729336 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mal8g0988 | 11 | 75 | C3H Transcription Factor Family | AT1G04990 | 45.455 | 3.09e-11 | 60.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Mal8g0988 | zf-CCCH | 8e-11 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mal8g0988 | - | - | vra:106765262 | 378.637 |