Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g0988 ATGTTGATTGTTAGAACACCAATAAATGAAAAGTATTTTCTTAAGACAGGAACATGTAAGTATGGATCGACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGCACCCGTAGTTTTCAATACTTTAGGTCTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGTGCTTGTAAGTTTGGTGTTGCATGCAAGTTTCATCATCCACAGCAGGCAGCGGCTTCCCTTGGAGCTTACCCGGTGGCTGCTTCCCCTCCCTCCGCAACTGTTACTTCATCAGGTTTTCCATATGCTGGTGGGTTTCCTGCATGGTCAATGCCGAGAATGTCGTATTTATCTGGACAAGGCATTCAATCTTATGTGCCTCCTTTTCTGCCTACTACACAAGGCGTTATGCCTGCGCTGAGCTGGAGCAACTACATGGGAAGTATTAACCCTGCTATGCCTACCGGTTTTCTCGGATCTAATCTTGTCTACGACTATATGAATCCGGCTGGAGAGACACTTTCTGGTGGACAGGTAATGAATTCAACTCTTCCAGATAGACCTGAGCAACCAGATTGTAAATACTTTATGAGCACTGGAACATGCAAATATGGATCTGATTGCAAGTTCCACCACCCTAAAGAAAGAATAGCCCAAACTTTATCAATTAATCCACTTGGCCTTCCTATGAGACCTGTAAGTGCATTTTCTGCTTTATTCTTAGGGTTCCTATGTTCTAGCTTCTTTTGTGAAAAAATCAATCACTTTTTTTTTTAA 780 0.4244 MLIVRTPINEKYFLKTGTCKYGSTCKYHHPKDRRGAAPVVFNTLGLPMRQEEKSCPYYMRTGACKFGVACKFHHPQQAAASLGAYPVAASPPSATVTSSGFPYAGGFPAWSMPRMSYLSGQGIQSYVPPFLPTTQGVMPALSWSNYMGSINPAMPTGFLGSNLVYDYMNPAGETLSGGQVMNSTLPDRPEQPDCKYFMSTGTCKYGSDCKFHHPKERIAQTLSINPLGLPMRPVSAFSALFLGFLCSSFFCEKINHFFF* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g0988 259 PANTHER PROTEIN PHOSPHATASE RELATED 11 236 - -
Mal8g0988 259 SUPERFAMILY CCCH zinc finger 48 77 IPR036855 GO:0046872
Mal8g0988 259 SUPERFAMILY CCCH zinc finger 191 217 IPR036855 GO:0046872
Mal8g0988 259 ProSiteProfiles Zinc finger C3H1-type profile. 188 216 IPR000571 GO:0046872
Mal8g0988 259 ProSiteProfiles Zinc finger C3H1-type profile. 11 32 IPR000571 GO:0046872
Mal8g0988 259 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 11 236 - -
Mal8g0988 259 Gene3D - 183 252 - -
Mal8g0988 259 Gene3D - 11 84 - -
Mal8g0988 259 SMART c3hfinal6 188 215 IPR000571 GO:0046872
Mal8g0988 259 SMART c3hfinal6 51 76 IPR000571 GO:0046872
Mal8g0988 259 SMART c3hfinal6 9 31 IPR000571 GO:0046872
Mal8g0988 259 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Mal8g0988 259 SUPERFAMILY CCCH zinc finger 12 33 IPR036855 GO:0046872
Mal8g0988 259 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 191 215 IPR000571 GO:0046872
Mal8g0988 259 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 11 31 IPR000571 GO:0046872
Mal8g0988 259 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 53 76 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g0988 Mal-Chr8 14727304 14729336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g0988 11 75 C3H Transcription Factor Family AT1G04990 45.455 3.09e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal8g0988 zf-CCCH 8e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g0988 - - vra:106765262 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g0988 8 14727304 14729336 Mal8g0988 8 14727304 14729336 ECH