Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g0944 ATGGATCATCATCAAATGATGAACATGGAAACTAGTAGGAAGTTTTTTCCATTTCCTTTGAGTAACAACTCCTCTGGTGTTCAAGATCATCATCATAACTACACCAACCATCAGAACAACACCACTTGTAGGGATAAAATCATGGCTCATCCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTCAATTGCTTGAAGGTTGGAGCACCTCCTGAAGTGGTGGCAAGCTTAGAGGAGTCATGTGCAAAATGTGAAATGTTGAATGGCTCTTCAGGAAGGACAGGAAGTAGTAGTTCTTGTTTAGGTGAAGATCCAGGTTTGGATCAGTTCATGGAGGCATATTGTGAGATGCTTATTAAGTATGAGCAAGAACTCACTAAACCCTTCAAAGAAGCCATGCTTTTCCTTTCAAGAATTGAGTCTCAGCTCAAGTCTCTTGCTGTTTCAACTGACTTTGGTCAAAGTGAAATTGCAGCTTCACATAATGAGATTGTTGTGCATGAAAACAACATAGATACTCAAGGTGAAGATCAGGAACTAAAAGTGCAACTTTTGCGCAAGTATAGTGGATATCTAGGAAGCCTTAAGAAAGAGTTTTTGAAGAAGAAAAAGAATGGAAAGTTACCAAAGGAAGCTCGCCAGCAACTTCTTGATTGGTGGAGCAGGCATTACAAATGGCCTTACCCATCGGAATCCCAAAAGCAAGCACTTGCAGAATCCACAGGCCTAGATTTGAAGCAGATCAACAATTGGTTCATTAATCAGAGAAAACGTCACTGGAAGCCTTCTGAGGATATGCAATTTGCTGTGATGGATGCTACAAATTACTACATGGAAAATGTCATGTGCAAGCCATTTCCTATGGATGCCATGCCTATGCTTCTTAATTAG 888 0.4065 MDHHQMMNMETSRKFFPFPLSNNSSGVQDHHHNYTNHQNNTTCRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCEMLNGSSGRTGSSSSCLGEDPGLDQFMEAYCEMLIKYEQELTKPFKEAMLFLSRIESQLKSLAVSTDFGQSEIAASHNEIVVHENNIDTQGEDQELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDAMPMLLN* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g0944 295 CDD homeodomain 210 262 IPR001356 GO:0003677
Mal8g0944 295 Pfam ELK domain 178 199 IPR005539 GO:0003677
Mal8g0944 295 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 285 - -
Mal8g0944 295 Pfam KNOX1 domain 44 84 IPR005540 GO:0003677|GO:0005634
Mal8g0944 295 Gene3D - 196 269 - -
Mal8g0944 295 SMART KNOX2_2 96 147 IPR005541 GO:0003677|GO:0005634
Mal8g0944 295 SMART ELK_2 178 199 IPR005539 GO:0003677
Mal8g0944 295 Pfam Homeobox KN domain 218 257 IPR008422 GO:0003677|GO:0006355
Mal8g0944 295 SUPERFAMILY Homeodomain-like 200 272 IPR009057 -
Mal8g0944 295 ProSiteProfiles 'Homeobox' domain profile. 198 261 IPR001356 GO:0003677
Mal8g0944 295 PANTHER HOMEOBOX KNOTTED-LIKE PROTEIN 3 285 - -
Mal8g0944 295 Pfam KNOX2 domain 100 145 IPR005541 GO:0003677|GO:0005634
Mal8g0944 295 ProSiteProfiles ELK domain profile. 178 198 IPR005539 GO:0003677
Mal8g0944 295 SMART HOX_1 200 265 IPR001356 GO:0003677
Mal8g0944 295 SMART KNOX1_2 41 85 IPR005540 GO:0003677|GO:0005634
Mal8g0944 295 ProSitePatterns 'Homeobox' domain signature. 236 259 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g0944 Mal-Chr8 14110584 14114296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g0944 43 288 Homeobox Transcription Factor Family AT1G62360 67.568 5.41e-110 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mal8g0944 KNOX2 8.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g0944 - - cam:101495840 483.026