Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g0788 ATGGCCAAGAAACGAAAGCTTCGTTCCTCTGACCCTGAACCCACCAAAGTCGAACCCGAACCACAACAACAAGAAGAAGTAGCCGAAGAAGAACAACCCGAATCAACGACACAAGACGAAGAAATCACACCGATTGAAGAAGATCAACCTCAAAACGAAGGAGAAGGTGAAGAACAAGAAGAAGAAGTAGCAGAAGAAGAAGAAGACGAAGAAGATGAAACCCTTGAAAATCAACAACAAGATGGCGGTGAAGTTTCCAACAACGCAGCCGTGTCGGAGCAAACTGTGACGGTGGAAGCTAACGGTGGTGAGGAAAACAACAATAACAACGAAGAAGAAGAGGAAGATCTCGAATTGGAAGATGAACCGGTAGAGAAGCTTCTGGAACCATTCACGAAGGAGCAATTACACGCGCTCGTGAAGCAATCGATTGAGAAGTATCCAGATCTATCAGAGAATGTTCGTCAGCTGGCTGATGTGGACCCCGCTCACCGGAAAATCTTCGTTCATGGTCTTGGTTGGGATGCTACCGCTGAATCGCTAACCACCGTGTTTTCGAAGTACGGTGAAATTGAAGATTGTAAGGCTGTGACTGATAAGTTATCTGGAAAATCAAAGGGGTATGCTTTTATTTTGTTTAAGCATCGAACTGGGTGTCGGCGAGCCCTGAAGCAGCCCCAGAAGGTGATAGGGAATCGGACGACAAGTTGTCAGTTGGCATCGGCTGGACCTGTTCCGGCTCCACCACCGAATGGGCCACCGGTATCTGAGTACACTCAAAGGAAGATTTTTGTCAGTAATGTGAGTTCTGATATTGATCCTCAGAAACTGCTTGAGTTTTTCAAGCAATTTGGAGAGGTTGATGATGGTCCTTTGGGGATTGATAAGGCCACTGGGAAGCCGAAGGGTTTTGCGCTGTTCGTTTATAAGACGGTGGAGAGTGCTAAGAAGGCTTTGGAAGAGCCGAATAAGACTTTTGAGGGGCATACTTTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGTTACAACAAGGGTCATTATCAGCAGCAGCAACATCACCAACCACATCATTCGCATCATCACCATCATCATGGTGGTGGTGGTGGTCACTACAATCCGAGGAAAGAAAAGAAGTATTCACATGGTGGTGGAGGCCCATCACATGGTGGTCACTTGATGGCTCCTCCTGGTCCTTCTGCTGGGGGTTACAATGCAGCTGTGCCGGCTCAGGGATTGAATCCAGTACTTGGACAGGCGCTGTCGGCTTTGCTTGCTAATCAAGGAGCTGGAATGGGGCTTGGGAATTTGCTTGGAGGTCTTGGTGGTGCACCTGTGAATCAAGCTGGACCGCCTCCTGCTGCGTATGGTAATCAAGCTGCTATGGCATATGGCCAGCCAGGGTTGCAACCACAATACCAGAATCCTCAGCTGGGGCAGAGTGGTGGTGTTCGACCTCATCCTGGTCCTGGTGGAGCTCCTTACATGGGTCACTAG 1497 0.4863 MAKKRKLRSSDPEPTKVEPEPQQQEEVAEEEQPESTTQDEEITPIEEDQPQNEGEGEEQEEEVAEEEEDEEDETLENQQQDGGEVSNNAAVSEQTVTVEANGGEENNNNNEEEEEDLELEDEPVEKLLEPFTKEQLHALVKQSIEKYPDLSENVRQLADVDPAHRKIFVHGLGWDATAESLTTVFSKYGEIEDCKAVTDKLSGKSKGYAFILFKHRTGCRRALKQPQKVIGNRTTSCQLASAGPVPAPPPNGPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGIDKATGKPKGFALFVYKTVESAKKALEEPNKTFEGHTLYCQKAVDGPKGYNKGHYQQQQHHQPHHSHHHHHHGGGGGHYNPRKEKKYSHGGGGPSHGGHLMAPPGPSAGGYNAAVPAQGLNPVLGQALSALLANQGAGMGLGNLLGGLGGAPVNQAGPPPAAYGNQAAMAYGQPGLQPQYQNPQLGQSGGVRPHPGPGGAPYMGH* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g0788 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 242 IPR000504 GO:0003723
Mal8g0788 498 Gene3D - 252 390 IPR012677 -
Mal8g0788 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 338 IPR000504 GO:0003723
Mal8g0788 498 MobiDBLite consensus disorder prediction 341 398 - -
Mal8g0788 498 MobiDBLite consensus disorder prediction 79 105 - -
Mal8g0788 498 Coils Coil 56 81 - -
Mal8g0788 498 MobiDBLite consensus disorder prediction 1 23 - -
Mal8g0788 498 MobiDBLite consensus disorder prediction 474 498 - -
Mal8g0788 498 MobiDBLite consensus disorder prediction 1 120 - -
Mal8g0788 498 MobiDBLite consensus disorder prediction 24 78 - -
Mal8g0788 498 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 484 - -
Mal8g0788 498 Coils Coil 100 120 - -
Mal8g0788 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 331 IPR000504 GO:0003723
Mal8g0788 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 234 IPR000504 GO:0003723
Mal8g0788 498 MobiDBLite consensus disorder prediction 106 120 - -
Mal8g0788 498 SUPERFAMILY RNA-binding domain, RBD 245 370 IPR035979 GO:0003676
Mal8g0788 498 SMART rrm1_1 166 238 IPR000504 GO:0003723
Mal8g0788 498 SMART rrm1_1 262 334 IPR000504 GO:0003723
Mal8g0788 498 CDD RRM_RBM24_RBM38_like 261 336 - -
Mal8g0788 498 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 484 - -
Mal8g0788 498 Gene3D - 157 243 IPR012677 -
Mal8g0788 498 MobiDBLite consensus disorder prediction 351 369 - -
Mal8g0788 498 CDD RRM_RBM24_RBM38_like 165 240 - -
Mal8g0788 498 SUPERFAMILY RNA-binding domain, RBD 154 246 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g0788 Mal-Chr8 11796864 11798360 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g0788 257 340 C2H2 Transcription Factor Family AT2G19380 30.952 5.74e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g0788 K12741 - gmx:100792637 535.028