Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mal8g0788 | ATGGCCAAGAAACGAAAGCTTCGTTCCTCTGACCCTGAACCCACCAAAGTCGAACCCGAACCACAACAACAAGAAGAAGTAGCCGAAGAAGAACAACCCGAATCAACGACACAAGACGAAGAAATCACACCGATTGAAGAAGATCAACCTCAAAACGAAGGAGAAGGTGAAGAACAAGAAGAAGAAGTAGCAGAAGAAGAAGAAGACGAAGAAGATGAAACCCTTGAAAATCAACAACAAGATGGCGGTGAAGTTTCCAACAACGCAGCCGTGTCGGAGCAAACTGTGACGGTGGAAGCTAACGGTGGTGAGGAAAACAACAATAACAACGAAGAAGAAGAGGAAGATCTCGAATTGGAAGATGAACCGGTAGAGAAGCTTCTGGAACCATTCACGAAGGAGCAATTACACGCGCTCGTGAAGCAATCGATTGAGAAGTATCCAGATCTATCAGAGAATGTTCGTCAGCTGGCTGATGTGGACCCCGCTCACCGGAAAATCTTCGTTCATGGTCTTGGTTGGGATGCTACCGCTGAATCGCTAACCACCGTGTTTTCGAAGTACGGTGAAATTGAAGATTGTAAGGCTGTGACTGATAAGTTATCTGGAAAATCAAAGGGGTATGCTTTTATTTTGTTTAAGCATCGAACTGGGTGTCGGCGAGCCCTGAAGCAGCCCCAGAAGGTGATAGGGAATCGGACGACAAGTTGTCAGTTGGCATCGGCTGGACCTGTTCCGGCTCCACCACCGAATGGGCCACCGGTATCTGAGTACACTCAAAGGAAGATTTTTGTCAGTAATGTGAGTTCTGATATTGATCCTCAGAAACTGCTTGAGTTTTTCAAGCAATTTGGAGAGGTTGATGATGGTCCTTTGGGGATTGATAAGGCCACTGGGAAGCCGAAGGGTTTTGCGCTGTTCGTTTATAAGACGGTGGAGAGTGCTAAGAAGGCTTTGGAAGAGCCGAATAAGACTTTTGAGGGGCATACTTTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGTTACAACAAGGGTCATTATCAGCAGCAGCAACATCACCAACCACATCATTCGCATCATCACCATCATCATGGTGGTGGTGGTGGTCACTACAATCCGAGGAAAGAAAAGAAGTATTCACATGGTGGTGGAGGCCCATCACATGGTGGTCACTTGATGGCTCCTCCTGGTCCTTCTGCTGGGGGTTACAATGCAGCTGTGCCGGCTCAGGGATTGAATCCAGTACTTGGACAGGCGCTGTCGGCTTTGCTTGCTAATCAAGGAGCTGGAATGGGGCTTGGGAATTTGCTTGGAGGTCTTGGTGGTGCACCTGTGAATCAAGCTGGACCGCCTCCTGCTGCGTATGGTAATCAAGCTGCTATGGCATATGGCCAGCCAGGGTTGCAACCACAATACCAGAATCCTCAGCTGGGGCAGAGTGGTGGTGTTCGACCTCATCCTGGTCCTGGTGGAGCTCCTTACATGGGTCACTAG | 1497 | 0.4863 | MAKKRKLRSSDPEPTKVEPEPQQQEEVAEEEQPESTTQDEEITPIEEDQPQNEGEGEEQEEEVAEEEEDEEDETLENQQQDGGEVSNNAAVSEQTVTVEANGGEENNNNNEEEEEDLELEDEPVEKLLEPFTKEQLHALVKQSIEKYPDLSENVRQLADVDPAHRKIFVHGLGWDATAESLTTVFSKYGEIEDCKAVTDKLSGKSKGYAFILFKHRTGCRRALKQPQKVIGNRTTSCQLASAGPVPAPPPNGPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGIDKATGKPKGFALFVYKTVESAKKALEEPNKTFEGHTLYCQKAVDGPKGYNKGHYQQQQHHQPHHSHHHHHHGGGGGHYNPRKEKKYSHGGGGPSHGGHLMAPPGPSAGGYNAAVPAQGLNPVLGQALSALLANQGAGMGLGNLLGGLGGAPVNQAGPPPAAYGNQAAMAYGQPGLQPQYQNPQLGQSGGVRPHPGPGGAPYMGH* | 499 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mal8g0788 | 498 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 165 | 242 | IPR000504 | GO:0003723 | |
Mal8g0788 | 498 | Gene3D | - | 252 | 390 | IPR012677 | - | |
Mal8g0788 | 498 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 261 | 338 | IPR000504 | GO:0003723 | |
Mal8g0788 | 498 | MobiDBLite | consensus disorder prediction | 341 | 398 | - | - | |
Mal8g0788 | 498 | MobiDBLite | consensus disorder prediction | 79 | 105 | - | - | |
Mal8g0788 | 498 | Coils | Coil | 56 | 81 | - | - | |
Mal8g0788 | 498 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Mal8g0788 | 498 | MobiDBLite | consensus disorder prediction | 474 | 498 | - | - | |
Mal8g0788 | 498 | MobiDBLite | consensus disorder prediction | 1 | 120 | - | - | |
Mal8g0788 | 498 | MobiDBLite | consensus disorder prediction | 24 | 78 | - | - | |
Mal8g0788 | 498 | PANTHER | NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 484 | - | - | |
Mal8g0788 | 498 | Coils | Coil | 100 | 120 | - | - | |
Mal8g0788 | 498 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 263 | 331 | IPR000504 | GO:0003723 | |
Mal8g0788 | 498 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 167 | 234 | IPR000504 | GO:0003723 | |
Mal8g0788 | 498 | MobiDBLite | consensus disorder prediction | 106 | 120 | - | - | |
Mal8g0788 | 498 | SUPERFAMILY | RNA-binding domain, RBD | 245 | 370 | IPR035979 | GO:0003676 | |
Mal8g0788 | 498 | SMART | rrm1_1 | 166 | 238 | IPR000504 | GO:0003723 | |
Mal8g0788 | 498 | SMART | rrm1_1 | 262 | 334 | IPR000504 | GO:0003723 | |
Mal8g0788 | 498 | CDD | RRM_RBM24_RBM38_like | 261 | 336 | - | - | |
Mal8g0788 | 498 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 1 | 484 | - | - | |
Mal8g0788 | 498 | Gene3D | - | 157 | 243 | IPR012677 | - | |
Mal8g0788 | 498 | MobiDBLite | consensus disorder prediction | 351 | 369 | - | - | |
Mal8g0788 | 498 | CDD | RRM_RBM24_RBM38_like | 165 | 240 | - | - | |
Mal8g0788 | 498 | SUPERFAMILY | RNA-binding domain, RBD | 154 | 246 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mal8g0788 | Mal-Chr8 | 11796864 | 11798360 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mal8g0788 | 257 | 340 | C2H2 Transcription Factor Family | AT2G19380 | 30.952 | 5.74e-09 | 56.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mal8g0788 | K12741 | - | gmx:100792637 | 535.028 |