Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mal8g0786 | ATGGCCAAGAAACGAAAGCTTCGTTCCTCTGACCCTGAACCCACCAAAGTCGAACCCGAACCACAACAACAAGAAGAAGTAGCCGAAGAAGAACAACCCGAATCAACGACACAAGACGAAGAAATCACACCGATTGAAGAAGATCAACCTCAAAACGAAGGAGAAGGTGAAGAACAAGAAGAAGAAGTAGCAGAAGAAGAAGAAGACGAAGAAGATGAAACCCTTGAAAATCAACAACAAGATGGCGGTGAAGTTTCCAACAACGCAGCCGTGTCGGAGCAAACTGTGACGGTGGAAGCTAACGGTGGTGAGGAAAACAACAATAACAACGAAGAAGAAGAGGAAGATCTCGAATTGGAAGATGAACCGGTAGAGAAGCTTCTGGAACCATTCACGAAGGAGCAATTACACGCGCTCGTGAAGCAATTGATTGAGAAGTATCCAGATCTATCAGAGAATGTTCGTCAGCTGGCTGATGTGGACCCCGCTCACCGGAAAATCTTCGTTCATGGTCTTGGTTGGGATGCTACCGCTGAATCGCTAACCACCGTGTTTTCGAAGTACGGTGAAATTGAAGATTTTAAGGCTGTGACTGGTAAGTTATCTGGAAAATCAAAGGGGTATGCTTTTATTTTGTTTAAGCATCAAACTGGGTGTTGCCGAGCCCTGAAGCAGCCCCAGAAGGTGATTGGGAATCGGACGACAAGTTGTCAGTTGGCATCGGCTGGACCTGTTCCGGCTCCACCATCAAATGGGCCACCGGTATCTGAGTACACTCAAAGGAAGATTTTTGTCAGGTTACAACAAGGGTCATTATCAGCAGCAGCAACATCACCAACCACATCATTCTCGCATCATCACCATCATGGTGGTGGTGGTCACTACAATCCGAGGAAAGAAAAGAAGTATTCACATGGTGGTGGAGGCCCATCACATGGTGGTCACTTGATGGCTCCTCCTGGTCCTTCTGCCGGGGGTTACAATGCAGCTGTGCCGGCTCAGGGATTGAATCCAGTACTTGGACAGGCGCTGTCGGCTTTGCTTGCTAATCAAGGAGCTGGAATGGGGCTTGGGAATTTGCTTGGAGGTCTTGGTGGTGCACCTGTGAATCAAGCTGGACCGCCTCCTGGTGCACCTATCCTGTTTATACTATCTGCTGTATGTTTCAGCAAACTCATATCAACATTGCTGCAAGTGGGGAGAAATTTTCACATGAAAACTCTGCTTCTGCACTCTACGGTGTGCAGAGACTACTTGGACAAGGACAAACAATTTGAACAAAATAAGACAAGTTCAAGAAGTTATGGAGACACTTAA | 1317 | 0.47 | MAKKRKLRSSDPEPTKVEPEPQQQEEVAEEEQPESTTQDEEITPIEEDQPQNEGEGEEQEEEVAEEEEDEEDETLENQQQDGGEVSNNAAVSEQTVTVEANGGEENNNNNEEEEEDLELEDEPVEKLLEPFTKEQLHALVKQLIEKYPDLSENVRQLADVDPAHRKIFVHGLGWDATAESLTTVFSKYGEIEDFKAVTGKLSGKSKGYAFILFKHQTGCCRALKQPQKVIGNRTTSCQLASAGPVPAPPSNGPPVSEYTQRKIFVRLQQGSLSAAATSPTTSFSHHHHHGGGGHYNPRKEKKYSHGGGGPSHGGHLMAPPGPSAGGYNAAVPAQGLNPVLGQALSALLANQGAGMGLGNLLGGLGGAPVNQAGPPPGAPILFILSAVCFSKLISTLLQVGRNFHMKTLLLHSTVCRDYLDKDKQFEQNKTSSRSYGDT* | 439 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mal8g0786 | 438 | SUPERFAMILY | RNA-binding domain, RBD | 151 | 249 | IPR035979 | GO:0003676 | |
Mal8g0786 | 438 | SMART | rrm1_1 | 166 | 238 | IPR000504 | GO:0003723 | |
Mal8g0786 | 438 | Gene3D | - | 157 | 243 | IPR012677 | - | |
Mal8g0786 | 438 | MobiDBLite | consensus disorder prediction | 79 | 105 | - | - | |
Mal8g0786 | 438 | Coils | Coil | 56 | 81 | - | - | |
Mal8g0786 | 438 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Mal8g0786 | 438 | PANTHER | NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 266 | - | - | |
Mal8g0786 | 438 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 165 | 242 | IPR000504 | GO:0003723 | |
Mal8g0786 | 438 | MobiDBLite | consensus disorder prediction | 1 | 120 | - | - | |
Mal8g0786 | 438 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 282 | 370 | - | - | |
Mal8g0786 | 438 | PANTHER | NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED | 282 | 370 | - | - | |
Mal8g0786 | 438 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 1 | 266 | - | - | |
Mal8g0786 | 438 | MobiDBLite | consensus disorder prediction | 24 | 78 | - | - | |
Mal8g0786 | 438 | Coils | Coil | 100 | 120 | - | - | |
Mal8g0786 | 438 | MobiDBLite | consensus disorder prediction | 106 | 120 | - | - | |
Mal8g0786 | 438 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 167 | 234 | IPR000504 | GO:0003723 | |
Mal8g0786 | 438 | MobiDBLite | consensus disorder prediction | 275 | 315 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mal8g0786 | Mal-Chr8 | 11758833 | 11760575 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mal8g0786 | 114 | 247 | C2H2 Transcription Factor Family | AT2G19380 | 42.537 | 1.70e-27 | 113 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mal8g0786 | K12741 | - | vvi:100258161 | 233.417 |