Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g0786 ATGGCCAAGAAACGAAAGCTTCGTTCCTCTGACCCTGAACCCACCAAAGTCGAACCCGAACCACAACAACAAGAAGAAGTAGCCGAAGAAGAACAACCCGAATCAACGACACAAGACGAAGAAATCACACCGATTGAAGAAGATCAACCTCAAAACGAAGGAGAAGGTGAAGAACAAGAAGAAGAAGTAGCAGAAGAAGAAGAAGACGAAGAAGATGAAACCCTTGAAAATCAACAACAAGATGGCGGTGAAGTTTCCAACAACGCAGCCGTGTCGGAGCAAACTGTGACGGTGGAAGCTAACGGTGGTGAGGAAAACAACAATAACAACGAAGAAGAAGAGGAAGATCTCGAATTGGAAGATGAACCGGTAGAGAAGCTTCTGGAACCATTCACGAAGGAGCAATTACACGCGCTCGTGAAGCAATTGATTGAGAAGTATCCAGATCTATCAGAGAATGTTCGTCAGCTGGCTGATGTGGACCCCGCTCACCGGAAAATCTTCGTTCATGGTCTTGGTTGGGATGCTACCGCTGAATCGCTAACCACCGTGTTTTCGAAGTACGGTGAAATTGAAGATTTTAAGGCTGTGACTGGTAAGTTATCTGGAAAATCAAAGGGGTATGCTTTTATTTTGTTTAAGCATCAAACTGGGTGTTGCCGAGCCCTGAAGCAGCCCCAGAAGGTGATTGGGAATCGGACGACAAGTTGTCAGTTGGCATCGGCTGGACCTGTTCCGGCTCCACCATCAAATGGGCCACCGGTATCTGAGTACACTCAAAGGAAGATTTTTGTCAGGTTACAACAAGGGTCATTATCAGCAGCAGCAACATCACCAACCACATCATTCTCGCATCATCACCATCATGGTGGTGGTGGTCACTACAATCCGAGGAAAGAAAAGAAGTATTCACATGGTGGTGGAGGCCCATCACATGGTGGTCACTTGATGGCTCCTCCTGGTCCTTCTGCCGGGGGTTACAATGCAGCTGTGCCGGCTCAGGGATTGAATCCAGTACTTGGACAGGCGCTGTCGGCTTTGCTTGCTAATCAAGGAGCTGGAATGGGGCTTGGGAATTTGCTTGGAGGTCTTGGTGGTGCACCTGTGAATCAAGCTGGACCGCCTCCTGGTGCACCTATCCTGTTTATACTATCTGCTGTATGTTTCAGCAAACTCATATCAACATTGCTGCAAGTGGGGAGAAATTTTCACATGAAAACTCTGCTTCTGCACTCTACGGTGTGCAGAGACTACTTGGACAAGGACAAACAATTTGAACAAAATAAGACAAGTTCAAGAAGTTATGGAGACACTTAA 1317 0.47 MAKKRKLRSSDPEPTKVEPEPQQQEEVAEEEQPESTTQDEEITPIEEDQPQNEGEGEEQEEEVAEEEEDEEDETLENQQQDGGEVSNNAAVSEQTVTVEANGGEENNNNNEEEEEDLELEDEPVEKLLEPFTKEQLHALVKQLIEKYPDLSENVRQLADVDPAHRKIFVHGLGWDATAESLTTVFSKYGEIEDFKAVTGKLSGKSKGYAFILFKHQTGCCRALKQPQKVIGNRTTSCQLASAGPVPAPPSNGPPVSEYTQRKIFVRLQQGSLSAAATSPTTSFSHHHHHGGGGHYNPRKEKKYSHGGGGPSHGGHLMAPPGPSAGGYNAAVPAQGLNPVLGQALSALLANQGAGMGLGNLLGGLGGAPVNQAGPPPGAPILFILSAVCFSKLISTLLQVGRNFHMKTLLLHSTVCRDYLDKDKQFEQNKTSSRSYGDT* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g0786 438 SUPERFAMILY RNA-binding domain, RBD 151 249 IPR035979 GO:0003676
Mal8g0786 438 SMART rrm1_1 166 238 IPR000504 GO:0003723
Mal8g0786 438 Gene3D - 157 243 IPR012677 -
Mal8g0786 438 MobiDBLite consensus disorder prediction 79 105 - -
Mal8g0786 438 Coils Coil 56 81 - -
Mal8g0786 438 MobiDBLite consensus disorder prediction 1 23 - -
Mal8g0786 438 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 266 - -
Mal8g0786 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 242 IPR000504 GO:0003723
Mal8g0786 438 MobiDBLite consensus disorder prediction 1 120 - -
Mal8g0786 438 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 282 370 - -
Mal8g0786 438 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 282 370 - -
Mal8g0786 438 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 266 - -
Mal8g0786 438 MobiDBLite consensus disorder prediction 24 78 - -
Mal8g0786 438 Coils Coil 100 120 - -
Mal8g0786 438 MobiDBLite consensus disorder prediction 106 120 - -
Mal8g0786 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 234 IPR000504 GO:0003723
Mal8g0786 438 MobiDBLite consensus disorder prediction 275 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g0786 Mal-Chr8 11758833 11760575 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g0786 114 247 C2H2 Transcription Factor Family AT2G19380 42.537 1.70e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g0786 K12741 - vvi:100258161 233.417