LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal8g0748	ATGGCTGTTACCTTCTCAGATCTACACACAGAAGAGGGTCTCAAATCCCTCAATGAATTCCTCTCTGGAAAAACCTATATTTCTAGGGACCAATTGACAAAGGATGATATCAAAGTGTATGGATATGTTTCGGAGAAACCAAGTGATGCTTTTCCCAATGTTGCTGGTTGGTACGATGTTGTCTCTTCACATCTTTCTGCAAGTTTCCCTGGAAAAGCTCAAGGTGTGAAATTCAGTGGAAGTGCTGCTCCAGCTGCAGAAGCACCTGCTAAAGCTGATGCACCTGCTGCTGCTGCTGAAGATGATGATGATCTTGACCTCTTTGGTGATGAAACAGAAGAGGATAAGAAGGCAGCCGAGGAAAGGGAGGCTTCTAAGAAGCCCGCCAAGAAGAAAGAAAGTGGAAAATCTTCCATTCTGCTTGATGTTAAGCCTTGGGACGACGAGACTGACATGAAGAAGCTAGAAGAGGCTGTTCGTAGCGTTGAGATTCCCGGTTTAACCTGGGGAGCATCTAAGCTTGTTGCTGTTGGATACGGAATCAAGAAGCTGCAGATCATGTTGACCATTATCGATGATCTTGTATCTGTTGACGACCTCATTGAAGAAAAACTCACAGTTGAGCCAATCAATGAGTATGTCCAGAGCTGCGACATCGTTGCATTCAACAAAATTTAA	678	0.4425	MAVTFSDLHTEEGLKSLNEFLSGKTYISRDQLTKDDIKVYGYVSEKPSDAFPNVAGWYDVVSSHLSASFPGKAQGVKFSGSAAPAAEAPAKADAPAAAAEDDDDLDLFGDETEEDKKAAEEREASKKPAKKKESGKSSILLDVKPWDDETDMKKLEEAVRSVEIPGLTWGASKLVAVGYGIKKLQIMLTIIDDLVSVDDLIEEKLTVEPINEYVQSCDIVAFNKI*	226

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal8g0748	225	CDD	EF1B	134	225	IPR014038	GO:0003746\|GO:0006414
	Mal8g0748	225	SUPERFAMILY	GST C-terminal domain-like	10	65	IPR036282	-
	Mal8g0748	225	PANTHER	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	1	225	-	-
	Mal8g0748	225	PANTHER	ELONGATION FACTOR 1-BETA 2	1	225	-	-
	Mal8g0748	225	Pfam	EF-1 guanine nucleotide exchange domain	138	225	IPR014038	GO:0003746\|GO:0006414
	Mal8g0748	225	MobiDBLite	consensus disorder prediction	87	133	-	-
	Mal8g0748	225	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 2.	214	225	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Mal8g0748	225	Gene3D	-	129	225	IPR014717	-
	Mal8g0748	225	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 1.	101	109	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Mal8g0748	225	SMART	EF1_GNE_2	136	225	IPR014038	GO:0003746\|GO:0006414
	Mal8g0748	225	MobiDBLite	consensus disorder prediction	111	133	-	-
	Mal8g0748	225	SUPERFAMILY	eEF-1beta-like	133	225	IPR036219	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal8g0748	Mal-Chr8	11453922	11456927	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal8g0748	1	225	Eukaryotic Initiation Factors Gene Family	AT5G12110	71.053	7.94e-105	300

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal8g0748	K03232		-	gmx:100500082	300.441