Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g0618 ATGTCTCCCCCACAGCAAAGCCGTGTGAACTCCAAAATCTGGCAGACATGTGCCGGCCCTTCGGTAAACGTTCCAAAGTTGCTTTCAAAAGTTTATTACTTCCCAAAAGGTCACTTGGAACATGCCTGCCCTTCTCCTAATGCTCACACAATCACCGTTATTGATGGTTATCGTCCGTCCTTTCCCTGCATCGTCATGGCCGTTGATCTATTAACCGATCCTCACACTGATGAGGTCTTTGCCAAACTGCTCCTTAGTCCGGTAACTGACTGCCAAGAACTTCCTGAGGTTCTTGACGAAGAAGAAGAAGATGATGGCGATAAGGTTGTTTCCTTTGTAAAAACTCTCACACAATCTGATTCTAATAACGGCGGTGGATTCTCTGTACCTAGACATTGCGCTGACTTGATTTTCCCCAAGCTTGACTTACATGCTCCTTTGCCATCTCAGCAACTGTCCATCACTGATGTTCAAGGCGGAGTTTGGAAGTTCAATCATGTCTACCGTGGTAGACCTAAGAGACACCTCTTCACTACTGGCTGGACTCCGTTTGTGAACAACAAGAGACTCGTCGCTGGGGATTCTGTTGTTTTCATGAAAAACTCGGCTGGGAATCTATTTGTTGGAATCCGCCGGAACATTAAGTTCACAGAAGCTAAGGAAGAGCAGAAGAAGGTGGTTATGGAGGCGGTGGAGTCGGCAGAAAAGAATATGGCATTTGAAGTTCTGTATTACCCTAGGGCTAACTCGTGCAATTTTGTGGTTGATGCTAAAGTTGTGGATGAAGCTATGAAGATTGGTTGGACATCTGGAATGAGAGTGAAGCTTCCTTTGAAGAGTGGTGAATCTTCAAATTCAAAGATGACATTTTTTCAGCCTCAAGGGACAATCTCTGATATGTCCAATGTCCCTAATTGGCGCATGCTTCAGGTAAACTGGGATGAACCTGAAATCTCGCAAAGTCCAAACCGTGTCAATCCTTGGCAAGTTGAACTTATTTCCCAAGCACCTGCAATGTATCTACCATTTCTCTCAACAAAAAAGCCTAGATTCACTCACGATTCTGCCTTGTTTAGTGATACAAAGGGAGATCCCTTCATTCCTATGATAGAGTTCCCTTTTTCAACAATGGAATCTTTGAACCAGACATTGTTGAATTGCGGTTATTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATGATCATTTATCTGTATCAGGTTCTTCCAACACTTCGAATGCAACGACAGGGTTGAGTGGTGTGTCGTCAACAAGTGTAAACATTGGCAGGTGTACATCCGATGAATTGTCACCTCATAACCATAGTAGTTTGAACACCTGTGGGACAAAGTTGGTTCACACAGTTAGTCCTGGTTCAATTAAGTTATTTGGTAAGATCATACAGCCTGTTGAAAGCAATGTCCATGATTCTGGTACCAATGGAGAGTGTTAG 1452 0.4408 MSPPQQSRVNSKIWQTCAGPSVNVPKLLSKVYYFPKGHLEHACPSPNAHTITVIDGYRPSFPCIVMAVDLLTDPHTDEVFAKLLLSPVTDCQELPEVLDEEEEDDGDKVVSFVKTLTQSDSNNGGGFSVPRHCADLIFPKLDLHAPLPSQQLSITDVQGGVWKFNHVYRGRPKRHLFTTGWTPFVNNKRLVAGDSVVFMKNSAGNLFVGIRRNIKFTEAKEEQKKVVMEAVESAEKNMAFEVLYYPRANSCNFVVDAKVVDEAMKIGWTSGMRVKLPLKSGESSNSKMTFFQPQGTISDMSNVPNWRMLQVNWDEPEISQSPNRVNPWQVELISQAPAMYLPFLSTKKPRFTHDSALFSDTKGDPFIPMIEFPFSTMESLNQTLLNCGYFPAGMQGARHDDHLSVSGSSNTSNATTGLSGVSSTSVNIGRCTSDELSPHNHSSLNTCGTKLVHTVSPGSIKLFGKIIQPVESNVHDSGTNGEC* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g0618 483 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Mal8g0618 483 Gene3D - 268 338 - -
Mal8g0618 483 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Mal8g0618 483 Pfam Auxin response factor 230 310 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mal8g0618 483 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 219 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal8g0618 483 Gene3D - 109 214 IPR015300 -
Mal8g0618 483 MobiDBLite consensus disorder prediction 402 421 - -
Mal8g0618 483 SMART B3_2 112 214 IPR003340 GO:0003677
Mal8g0618 483 CDD B3_DNA 111 212 IPR003340 GO:0003677
Mal8g0618 483 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 225 481 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal8g0618 483 SUPERFAMILY DNA-binding pseudobarrel domain 105 223 IPR015300 -
Mal8g0618 483 PANTHER AUXIN RESPONSE FACTOR 225 481 - -
Mal8g0618 483 Coils Coil 217 237 - -
Mal8g0618 483 PANTHER AUXIN RESPONSE FACTOR 5 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g0618 Mal-Chr8 9226037 9228331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g0618 1 483 B3 DNA Binding Superfamily AT1G77850 37.230 9.28e-114 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mal8g0618 B3 3.7e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g0618 - - mtr:MTR_5g040880 455.677