Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g0456 ATGTCTATTACCATCACTTCACTAACTATGACCAAATGGTTTTGTGGAACAATTGAAGCAATAGTTAAGTGTAAGGAAATTCTTTCTTTAATGGCATTGAAAGTTATGGAGAGAATTCTTCTTGCTGCATTCACCTGCATTTTAGCACTAGGAGGGTCAATAATAGGAACAATAGCAGGAGCCATCAAAGGTCATACCACAGAAATTGGTTTTCTTGATGGAGCTGGCAAAGGAGCAATTGCAGGAGCCATTGCAGCCATAGAATTGATGAGTTTTGCTTCTGTGGCTGAGCCGTTTTCCAAGGTTGCTTTGCTGAGAAGTTTATTAAATGGAAAAATATTTATGGAATGGATATGTCCAACTGCTGCACAAGCTTATATGTTTTATATAAATTCACTAGAAACAGGTTATGGAGGAGTGTTTTCAGATATTTATGACAACATGGGAGTTAAAGGCATGCCCCAAAGTTGTATTATGAAGCTTCCATTTCATCAATTCTGCTCCAGCAAAATGATGAAATTATACAATGAGTCACGCTGCTCAATTTGCTTTCAGGATTTTGAAGATGAAGAATTGGTGAGAATACTTCCAAAATGTAGCCACATTTTTCATATAGAATGCATTGACAAGTGGCTAGTCCAACAAGGATCATGTCCCATTTGTAGAACTTATTACGTTCCCGACCATATTAATTCGTGA 699 0.372 MSITITSLTMTKWFCGTIEAIVKCKEILSLMALKVMERILLAAFTCILALGGSIIGTIAGAIKGHTTEIGFLDGAGKGAIAGAIAAIELMSFASVAEPFSKVALLRSLLNGKIFMEWICPTAAQAYMFYINSLETGYGGVFSDIYDNMGVKGMPQSCIMKLPFHQFCSSKMMKLYNESRCSICFQDFEDEELVRILPKCSHIFHIECIDKWLVQQGSCPICRTYYVPDHINS* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g0456 232 CDD RING-H2_PA-TM-RING 180 222 - -
Mal8g0456 232 SMART ring_2 180 221 IPR001841 -
Mal8g0456 232 SUPERFAMILY RING/U-box 173 228 - -
Mal8g0456 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 226 IPR013083 -
Mal8g0456 232 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 22 224 - -
Mal8g0456 232 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 22 224 IPR044523 -
Mal8g0456 232 Pfam Ring finger domain 179 222 IPR001841 -
Mal8g0456 232 ProSiteProfiles Zinc finger RING-type profile. 180 222 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g0456 Mal-Chr8 6898392 6900161 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g0456 18 224 C3H Transcription Factor Family AT5G66070 30.455 4.71e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g0456 - K19041 gmx:100305612 254.988