LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal8g0382	ATGGATGACGTATCGGTGTCAGAACCGACGACGGATCCGCCACAGGAGATTGAGAACGGAGGAGGAGAAGAACGAGAGGAACGGTTAAGCAAGAAGGCGAAGGTGGAGGAGAATGAGAATTCGGAGGCGGAATTGAAACGAGTGGCGGAGATTGTTTTGGTGTTATCGACAATGGCGACGATGCGAGCAGGAAAGAAACCAACTGACGTTGAGGTTGAGCTGATGAAAGAGGCGAGGACGAAGCTGGCGGTTCTATGTCAAGGGATTGCTCCGAAGGATATTGTTGGTGGTGAAGCTATTGGTAGTGTGATTGAAGATCTTGGATTGAATGCTAAGGCTGTGGATCAGAGGTTAGGGTTTCGAGTTCCGAAGATGTCGATTGCTGAGAAGTATTTGTTCGCCAAGTCTAAGATGGAGGAATCAAAGAAATTCGTCGCACCTTCTACAACATATACATCTCAACCCTTTCAAACAAACACCGGTGGAATGGTTGACAATCGTGTACCAACAACTGCTGTTCGAATGTTTGCGTCTGATAAATCAAACCACACAGCAATGCCTTCTACAGTTTCCATGGCGTCTATGCCTCCTCATCTTGCTGCAGGATCTTCTGCACCATTGCAATATCAATCAACCAGCAATGAAGTGAGACCCCCCATTGTTTCTGGTGTAATGCCTAGCAGTCACATGGGGAGAAATCCATCTTCTGTGGCATTGCCTAGAGTTGAAAACCCTCAGTTTAAAGTTACTGCAGGATTGAGTGGGGCTCCTTATGTCCTTCAGGTCCAAGCAAATTCACTGGCAAACCAACCATTAGTGAATGCTCCTGCATGGTCAATACAGACTCAACCTGTGTCATTAGGTAGAAATGTATCAGAAAACAAGGTGCCTGCTCATAACTCTGTCAAGGTTGAAGCAACTGCTGATGCAACTGTATCAAGGGCAGGTCCACAGGTAACAGCGGCTCAGAACATTAGACCATTCATTACTCAAACGGGACCTGGAAATATGTCTACTATGCACCAGCCGTTGCAGGGCGGGAACATGGTTCGACCTCCTTTGATTCCCAGTCATTCTGATATTGCAAAGGCTGTCCAGAAGTTGTTAATACCAAAGCTTCCTGACCATCCCACATGGACTCCTCCGTCAAGGGATTATATGAGTAAGTCTTTCACATGTCAGATGTGCGAGCTCACTGTCAGTGAGGTTGATTCTGTTCTTCTCTGTGATGCCTGTGAAAAGGGATTTCACTTGAAGTGCCTGCAGCCATCAGTCATTAGAGGAATTCATAATAGAGTTGATTGGCACTGCATGAGGTGCTTGGGTTTAAGCGGTGGAAAGCCCTTGCCTCCAAAATATGGTCGTGTGATGCGATCTTCAATTACATCACCAAGTTTTCCCTCTAATTCAGCTGGTATTCAACCATCTTCAGAGAAGAAACCAGATAACTTAGATCCGAAGGTCATCCCACAGATGTTAATAACAAATGGAGACTCTGTTCCAGCTGATTCCAGCACCAATCACAATACTGAGCCGTCATTTGACTCAAATACCCCAGATACGAGAGATATACAAGGTTCCAACATTTCATCTAGCATTGAAACCATTGATGAGAAGCCTGATCCAAACATATGTGTGAAATCTGCAGCTTGTAGTGCTTCCACTGGCGTGCAGGGTGAAGGTTATGCTGAACAAATAGATTCAAAGGCTTTGACCTGTAAAGAGACTTCTGAATCTGAAACTCTTCCTAAATTATCCGAGCCGGCTAAATGTGGAAATTTGCAATCATCACCAGATTCTCAAGTTGAGATGGCAGTGTCACAGGACAATGCTGAAATACCATCAGATAGACACGATAGCAGTAGCGTTATAATTATTAATCAAAAGGAATCTCATGAAGGAGAAAGTACAACTTATGATATCAAGCGTGATGATCTAGATGTTGCACAACTGAATTCTGTCGGAGGTTCTGGAACTAATACTGAAGGCATTCAGCACTCTGCTTTATCTTCAGATAGCTCACATGCTGTAGAGTGGATTGGTGATGTTGTACAACTTGTAGATGAGAAAAAGCATTACCAATCTTGTTGCATTGATGGAGTAACATATAGCCTGCAAGGTCATGCTTTTTTCACATCCAGCCATGGCAAACTGACACCTTCTAAACTTCAGTCTATGTGGGAAGATTCCAAAACTGGGGTGAAGTGGGTTAAGGTGACGAAGTGCTACTTTCCTGATGATTTGCCGGGGAATATTGGTCATCCTTGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAATTGAAATGGCTAGCTCTATCCGAGGCCCCTGTGTAGTCCTTCCATATGATAAATTTAAACAAGAAAATGACAGAAGATCTCAATTTGGAGTTGAGGCAAGTGCTAGTGTACAGCCCATTTTCCTTTGCAGGTGGTTTTATGATGAAATCAAAAAGTCATTTCAACCTGTTATCAGTTGA	2490	0.4373	MDDVSVSEPTTDPPQEIENGGGEEREERLSKKAKVEENENSEAELKRVAEIVLVLSTMATMRAGKKPTDVEVELMKEARTKLAVLCQGIAPKDIVGGEAIGSVIEDLGLNAKAVDQRLGFRVPKMSIAEKYLFAKSKMEESKKFVAPSTTYTSQPFQTNTGGMVDNRVPTTAVRMFASDKSNHTAMPSTVSMASMPPHLAAGSSAPLQYQSTSNEVRPPIVSGVMPSSHMGRNPSSVALPRVENPQFKVTAGLSGAPYVLQVQANSLANQPLVNAPAWSIQTQPVSLGRNVSENKVPAHNSVKVEATADATVSRAGPQVTAAQNIRPFITQTGPGNMSTMHQPLQGGNMVRPPLIPSHSDIAKAVQKLLIPKLPDHPTWTPPSRDYMSKSFTCQMCELTVSEVDSVLLCDACEKGFHLKCLQPSVIRGIHNRVDWHCMRCLGLSGGKPLPPKYGRVMRSSITSPSFPSNSAGIQPSSEKKPDNLDPKVIPQMLITNGDSVPADSSTNHNTEPSFDSNTPDTRDIQGSNISSSIETIDEKPDPNICVKSAACSASTGVQGEGYAEQIDSKALTCKETSESETLPKLSEPAKCGNLQSSPDSQVEMAVSQDNAEIPSDRHDSSSVIIINQKESHEGESTTYDIKRDDLDVAQLNSVGGSGTNTEGIQHSALSSDSSHAVEWIGDVVQLVDEKKHYQSCCIDGVTYSLQGHAFFTSSHGKLTPSKLQSMWEDSKTGVKWVKVTKCYFPDDLPGNIGHPCISEVNEVYESNSDRIEMASSIRGPCVVLPYDKFKQENDRRSQFGVEASASVQPIFLCRWFYDEIKKSFQPVIS*	830

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal8g0382	829	MobiDBLite	consensus disorder prediction	497	527	-	-
	Mal8g0382	829	MobiDBLite	consensus disorder prediction	1	40	-	-
	Mal8g0382	829	SMART	PHD_3	392	441	IPR001965	-
	Mal8g0382	829	MobiDBLite	consensus disorder prediction	18	40	-	-
	Mal8g0382	829	PANTHER	RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN	15	828	-	-
	Mal8g0382	829	MobiDBLite	consensus disorder prediction	458	477	-	-
	Mal8g0382	829	CDD	PHD_SF	392	440	-	-
	Mal8g0382	829	CDD	BAH	700	827	-	-
	Mal8g0382	829	MobiDBLite	consensus disorder prediction	454	527	-	-
	Mal8g0382	829	ProSiteProfiles	BAH domain profile.	701	828	IPR001025	GO:0003682
	Mal8g0382	829	SUPERFAMILY	FYVE/PHD zinc finger	384	446	IPR011011	-
	Mal8g0382	829	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	350	441	IPR013083	-
	Mal8g0382	829	Gene3D	-	680	828	IPR043151	-
	Mal8g0382	829	PANTHER	RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN	15	828	-	-
	Mal8g0382	829	ProSitePatterns	Zinc finger PHD-type signature.	393	440	IPR019786	-
	Mal8g0382	829	ProSiteProfiles	Zinc finger PHD-type profile.	390	443	IPR019787	-
	Mal8g0382	829	Coils	Coil	26	46	-	-
	Mal8g0382	829	Pfam	PHD-finger	393	440	IPR019787	-

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	PHD	Mal8g0382		PHD	4.2e-07	CL0390

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal8g0382	-		-	gmx:100807139	1184.47

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal8g0382	8	5382271	5390621	Mal8g0382	8	5382271	5390621	ECH