LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal8g0314	ATGAATGCCACCACCACCAACTCCGGCGACCACCACTCTACCTCGGAGCTCCGTGATGAGACACCCAATGATCCCAATCGAACTGGGTCGGGTCAAAATTCAACGGCAAGATACAAACTGATGTCGCCGGCGAAGCTTCCGATCTCAAGGTCGCCGTGCATCACGATACCTGCCGGGTATAGTCCGACGTCGTTGTTGGAGTCACCGGTTCTTCTTTCTAACATGAAAGTGGAGCCTTCACCGACTACAGGGTCCCTTCTTCAAGCTTTACACTGTTCTATGGCTTCTGCTGGTTCTGCTACATTTCCTGTAACCTCTGCATGCTTCAATACCAGCACTGTTAATGGCAGAAAATTAAGTTTCTTTGAGTTTAAACCACAAGATAGAAATATGGTTCCTGCAGACTTCAACAACCATGTAAGCGATAAATCTACTCAAGTAGAAGGTTCAGAAAATGGTCAATCGTTTCGATCCTCACCATTAAATGAAAATGAGATAGCAGATCAATCTAATGAATTAAGCCTATCATCACCTGTTCAAATGGTTAGTTCTGCGGCTAGTGCTCCCGTTGATGTCAATTCGGATGAACTTAACCAGAAAGGCAACACAGCGAATGGGCCTCAATCATCAAATGATGGATACAATTGGCGAAAGTATGGGCAAAAACATGTTAAAGGGAGTGAATTTCCGCGTAGCTATTACAAATGTACGCATCCTAACTGTGAAGTGAAAAAACTTTTTGAACGCTCTCATGATGGTCAAATCACTGAGATAATTTATAAGGGAACACATGATCATCCTAAACCTCAACCAAGCAACAGATACTCTGCCGGTTCTATTATGTCTACACAAGGAGAAAGATCCGATAATAGGGCATCTTCTTTGGCTGGCCGAGATGACAAAGCATCTAATAGTCCAGAGCAATCAAATGTGGCAACAAATGATCTTAGTCCAGAGGCTGGATTTGCGTCGACCAGGACAAACGATGAGGTTGATGATGAAGATCTCTTCTCAAAACGAAGAAAAATGGAACTCGGAAATGCTGACATCATTCCTGTAGTTAAGCCCATCCGAGAGCCACGGGTTGTTGTACAGACTATGAGTGAAGTTGATATATTGGATGATGGATACCGCTGGCGTAAATATGGGCAGAAGGTGGTGAGGGGAAATCCTAATCCAAGGAGTTATTACAAATGTACAAATGCGGGTTGCCCCGTTAGGAAACACGTCGAGAGGGCATCACATGACCCGAAAGCTGTAATAACAACATATGAGGGCAAACACAATCATGATGTACCTGCTGCAAGGAGTAGTAGCCATGACATGACAGGACATGCAACTTCAATAAGACAGACAAGGATAAAGTTCGAAGAAAGCGATACTATTAGTCTTGACCTTGGGATGGGAATCAACTCGGCAGCTGAAAATAGATCGAACGGGCAAGGAAGAATGCTGCTCTCCGAATTTGGGAATAGCAGTCAAACTCACACAAGCAATTCCAATTTCAAGTTTGTTCATAATACTAGAGAAAATAGAAATGATGGTTCGTCTTTAAACCATTCTGCGTATCCTTGCTCACAGACCATGGGAAGAATACTAATGGGGCCATGA	1611	0.4364	MNATTTNSGDHHSTSELRDETPNDPNRTGSGQNSTARYKLMSPAKLPISRSPCITIPAGYSPTSLLESPVLLSNMKVEPSPTTGSLLQALHCSMASAGSATFPVTSACFNTSTVNGRKLSFFEFKPQDRNMVPADFNNHVSDKSTQVEGSENGQSFRSSPLNENEIADQSNELSLSSPVQMVSSAASAPVDVNSDELNQKGNTANGPQSSNDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSNRYSAGSIMSTQGERSDNRASSLAGRDDKASNSPEQSNVATNDLSPEAGFASTRTNDEVDDEDLFSKRRKMELGNADIIPVVKPIREPRVVVQTMSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARSSSHDMTGHATSIRQTRIKFEESDTISLDLGMGINSAAENRSNGQGRMLLSEFGNSSQTHTSNSNFKFVHNTRENRNDGSSLNHSAYPCSQTMGRILMGP*	537

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal8g0314	536	SUPERFAMILY	WRKY DNA-binding domain	365	433	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mal8g0314	536	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	29	508	-	-
	Mal8g0314	536	ProSiteProfiles	WRKY domain profile.	211	269	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mal8g0314	536	SMART	WRKY_cls	210	268	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mal8g0314	536	SMART	WRKY_cls	373	432	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mal8g0314	536	MobiDBLite	consensus disorder prediction	260	334	-	-
	Mal8g0314	536	MobiDBLite	consensus disorder prediction	1	38	-	-
	Mal8g0314	536	MobiDBLite	consensus disorder prediction	269	324	-	-
	Mal8g0314	536	MobiDBLite	consensus disorder prediction	24	38	-	-
	Mal8g0314	536	MobiDBLite	consensus disorder prediction	137	216	-	-
	Mal8g0314	536	SUPERFAMILY	WRKY DNA-binding domain	209	269	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mal8g0314	536	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	29	508	IPR044810	GO:0003700
	Mal8g0314	536	Pfam	WRKY DNA -binding domain	211	267	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mal8g0314	536	Pfam	WRKY DNA -binding domain	374	430	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mal8g0314	536	ProSiteProfiles	WRKY domain profile.	368	433	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mal8g0314	536	Gene3D	WRKY domain	198	270	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mal8g0314	536	Gene3D	WRKY domain	358	434	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mal8g0314	536	MobiDBLite	consensus disorder prediction	133	218	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal8g0314	Mal-Chr8	4401105	4405065	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal8g0314	41	536	WRKY Transcription Factor Family	AT4G26640	53.073	5.83e-169	486

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Mal8g0314		WRKY	1.3e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal8g0314	-		-	gmx:100816583	802.357

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal8g0314	8	4401105	4405065	Mal8g0314	8	4401105	4405065	ECH
	Mal2g3584	2	56155194	56161874	Mal8g0314	8	4401105	4405065	PCT