Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g0268 ATGGAAGACAATGAAACGGTGAAAGCGATGGTTCCATATACACAACAACTCAACAATGACTTGGAGACCTTCTATGTCAAACTCACTCAGTTTTTGGATCCCTCTGGACTCAATCTCATTTTCAATGTCCGAGAAGCACCCCTAAACTTGTACCTGTTTTACTTGGAGGTCACCGGGAGAGGAGGCTATCACCAGGTTGGCCAAGAAAACAAATGGGGTGAAGTTGTTTCTGCACTAAAACTGGAAGGAAACAACCCAGCTTTATGTGCTCAAGTTGAAAAGCTCTATCATAAACTTCTATACGAATTTCAGAAATTGTACTTCTACAGGTCTCCAGCAACTCAAACTGCAACTGGCGGTGGCACAAAAGATTATGAAGATTATCTGAAGGCGGCAAAGATATTTCAGGACTACTACTCTAGTCAAATTACAGGATATGGATATCAAGAACCTCAAGTGTTTCAACAAGCACCCTCAAGTAACGAAGAACAGAAGAAACGAAGAGGTGCTCCAAGGGGACAAAGTAGTGCATACCAAATATTCCTCAAGAAGGAATGTACTCGACTAAAAGCTGATCATCAGGAGATAGGCGGCAGAAAACAAATGGCTATTGATGCTTGGAAGAAGATGTCAGACCTTGATAAAAAGCCATATGTAGAGGAAAGCAAGAATTTAAAGGAAAAAAACAAAGAAGCAATGATCATTGACGACAACAAACAGAAGAGCACTCAAGATCGTAAGAGGGGTAAAAAGAGGCCTAAAGTGTGTGGTGACCACCACTGA 783 0.4138 MEDNETVKAMVPYTQQLNNDLETFYVKLTQFLDPSGLNLIFNVREAPLNLYLFYLEVTGRGGYHQVGQENKWGEVVSALKLEGNNPALCAQVEKLYHKLLYEFQKLYFYRSPATQTATGGGTKDYEDYLKAAKIFQDYYSSQITGYGYQEPQVFQQAPSSNEEQKKRRGAPRGQSSAYQIFLKKECTRLKADHQEIGGRKQMAIDAWKKMSDLDKKPYVEESKNLKEKNKEAMIIDDNKQKSTQDRKRGKKRPKVCGDHH* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g0268 260 Pfam HMG-box domain 171 233 IPR009071 -
Mal8g0268 260 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 16 247 - -
Mal8g0268 260 ProSiteProfiles ARID domain profile. 18 108 IPR001606 GO:0003677
Mal8g0268 260 MobiDBLite consensus disorder prediction 215 244 - -
Mal8g0268 260 SMART bright_3 19 109 IPR001606 GO:0003677
Mal8g0268 260 MobiDBLite consensus disorder prediction 245 260 - -
Mal8g0268 260 Pfam ARID/BRIGHT DNA binding domain 22 103 IPR001606 GO:0003677
Mal8g0268 260 Gene3D High mobility group box domain 166 235 IPR036910 -
Mal8g0268 260 SUPERFAMILY ARID-like 13 114 IPR036431 GO:0003677
Mal8g0268 260 MobiDBLite consensus disorder prediction 154 175 - -
Mal8g0268 260 CDD HMGB-UBF_HMG-box 171 233 - -
Mal8g0268 260 MobiDBLite consensus disorder prediction 215 260 - -
Mal8g0268 260 SUPERFAMILY HMG-box 160 233 IPR036910 -
Mal8g0268 260 SMART ARID_2 15 104 - -
Mal8g0268 260 CDD ARID 22 103 - -
Mal8g0268 260 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 16 247 - -
Mal8g0268 260 Gene3D - 4 126 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g0268 Mal-Chr8 3906058 3911051 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g0268 3 223 ARID Transcription Factor Family AT1G55650 23.016 2.63e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mal8g0268 ARID 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g0268 - - mtr:MTR_5g095070 335.88