Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g0229 ATGGCTGATTCCGACAACGAATCGGGAGGAGCACCGAACGCCGGGAACAGTGAGTTATCACCACGAGAACAAGACCGATTCTTACCAATAGCAAACGTGAGCAGAATAATGAAGAAGGCGTTACCGGCGAACGCAAAGATCTCGAAAGATGCTAAGGAAACAGTTCAGGAATGTGTATCGGAGTTCATCAGCTTCATCACCGGCGAAGCTTCCGATAAGTGTCAGAGGGAGAAACGAAAGACGATCAACGGCGACGATCTGCTTTGGGCGATGACTACGTTAGGATTTGAAGAGTACGTTGAACCGTTGAAGATTTATCTTCAACGATTCAGAGAGATCGAAGGTGAGAAAACCGTTGCTGCACGTGATAAAGACGGTGTTGCTCCTTCTTCTTCGTCGGTTTTTGATTATGTTGCTCCTCCTCAAGTTGGAATGATCATGCACCAGCATCAGCATCAGCATCAGGGACACGTGTACGGTTCTGGTGGTTTTCATCAAGTGCCTGGTGGACCCGGTTATCCTAATGCTGGATCTAATGCGGGTAGACCCAGGTAG 555 0.4829 MADSDNESGGAPNAGNSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQRFREIEGEKTVAARDKDGVAPSSSSVFDYVAPPQVGMIMHQHQHQHQGHVYGSGGFHQVPGGPGYPNAGSNAGRPR* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g0229 184 MobiDBLite consensus disorder prediction 1 24 - -
Mal8g0229 184 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 158 - -
Mal8g0229 184 MobiDBLite consensus disorder prediction 159 184 - -
Mal8g0229 184 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Mal8g0229 184 SUPERFAMILY Histone-fold 24 130 IPR009072 GO:0046982
Mal8g0229 184 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mal8g0229 184 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Mal8g0229 184 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Mal8g0229 184 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Mal8g0229 184 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mal8g0229 184 Gene3D Histone, subunit A 16 155 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g0229 Mal-Chr8 3520569 3521123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g0229 1 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.777 4.17e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mal8g0229 CBFD_NFYB_HMF 1.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g0229 K08065 - gmx:100813580 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g0229 8 3520569 3521123 Mal8g0229 8 3520569 3521123 ECH
Mal2g3481 2 53002659 53003258 Mal8g0229 8 3520569 3521123 PCT