Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g0153 ATGGTTGGAACAAACTTCAGTGAGATAGATTGCAACTTGTTTGACAATATCAACGATTTGTATGAATACGATAACATTTTCAATTACCCCATAAATGTCGACGCATCTTCCTTACAATTCTCTGTCGAAAATTGGTACTCACTAGCAAACATCTGGCCGAATGAGTATGACTCGGTGATATCCGACAACACTCCAGACCTCTATCTTCCGAGCAATGACATTCTTCCATTGGAATGGCTCTCCAATAATGTGGATGATTCATTTTGTGAGGAGAGTCTCATAGAAAAGAAATTAGAGCAACAACCAACATCATCAGTCAACAAGGAGGATTTTGTGCTCCTTGAAAGCAGTAGTTCACACACTGGTGGAAAGACCACAGTGAGACGTACACGTTCCAAGCGTCCACGTCCTGCAACTTTTAATCCATCTCGTTCAATCATGCAACTCATTTCTACTACTTCCTCTTTTGTAGGGGAGAATATGCACACTAGTGTTATCTCCACCAAGGCGGTGTCTTCAGAAAATTTTCTTGAGTATCAAATTACAAAGGAGAAACCAAAGCTTTCTTCTGTAGAGTCCAAGAAGAAAAAGAAAACAAAGGCGCCACTTCCGGCTGCTCCAGGAGATGAGCATGCTTTGGTACCTATTAAGAAATGTACCCATTGTGAGATGACGAAGACTCCACAATGGAGGGCAGGTCCAAAGGGGCCCAAAACACTCTGCAATGCTTGCGGTGTTCGCTTCAAGTCAGGCCGACTTTGCGCTGAATACCGACCTGCTGCTAGCCCGAATTTTTGTCCATATTTGCACTCCAACTCCCACAAGAAGATCCTTGAAATGAGACGCCGAAATAAGAATTCTGGTATTCTTGCCTTGGAATACATATGA 888 0.4279 MVGTNFSEIDCNLFDNINDLYEYDNIFNYPINVDASSLQFSVENWYSLANIWPNEYDSVISDNTPDLYLPSNDILPLEWLSNNVDDSFCEESLIEKKLEQQPTSSVNKEDFVLLESSSSHTGGKTTVRRTRSKRPRPATFNPSRSIMQLISTTSSFVGENMHTSVISTKAVSSENFLEYQITKEKPKLSSVESKKKKKTKAPLPAAPGDEHALVPIKKCTHCEMTKTPQWRAGPKGPKTLCNACGVRFKSGRLCAEYRPAASPNFCPYLHSNSHKKILEMRRRNKNSGILALEYI* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g0153 295 CDD ZnF_GATA 218 265 IPR000679 GO:0006355|GO:0043565
Mal8g0153 295 SMART GATA_3 213 263 IPR000679 GO:0006355|GO:0043565
Mal8g0153 295 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 276 - -
Mal8g0153 295 PANTHER GATA TRANSCRIPTION FACTOR 8 1 287 - -
Mal8g0153 295 MobiDBLite consensus disorder prediction 187 209 - -
Mal8g0153 295 ProSiteProfiles GATA-type zinc finger domain profile. 217 249 IPR000679 GO:0006355|GO:0043565
Mal8g0153 295 MobiDBLite consensus disorder prediction 187 204 - -
Mal8g0153 295 ProSitePatterns GATA-type zinc finger domain. 219 244 IPR000679 GO:0006355|GO:0043565
Mal8g0153 295 Gene3D - 215 287 IPR013088 GO:0006355|GO:0008270
Mal8g0153 295 MobiDBLite consensus disorder prediction 118 141 - -
Mal8g0153 295 Pfam GATA zinc finger 219 252 IPR000679 GO:0006355|GO:0043565
Mal8g0153 295 PANTHER GATA TRANSCRIPTION FACTOR 1 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g0153 Mal-Chr8 2495235 2497902 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g0153 66 287 C2C2-Gata Transcription Factor Family AT5G25830 40.175 2.00e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal8g0153 GATA 7e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g0153 - - mtr:MTR_1g116010 276.174