Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g0150 ATGGTTGGAACAAACTTCAGTGAGATAGATTGCAACTTGTTTGACAATAAAGTCGATTTGTATGAATATGATAACATTTTCAATTACCCCATCAACGTCGACGCTTCTTCCTTACAGTTCCCCGTCGAAAATTGGTACTCACTAGCAAACATCTGGCCGAATGAGTACGACTCGGTGATATCCGACAACACTTCAGACCTCTACCTTCCGAGCAACGACATTCTTTCATTGGAATGGTTGTCCAATAATGTGGATGATTCATTTTGTGAGGAGAGTCTCATAGAAAAGAAATTAGAGCAACAACCAGCATCATCAGTCAACAAGGAGGATTTTGTGCTCCTTGAAAGCAGTAGTTCACACACTGGTGGAAAGACCACAGTGAGACGTACACGTTCCAAGCGTCCACGTCCTGCAACCTTCAATCCATCTCGTTCAATCATGCAACTCATTTCTACTACTTCCTCTTTTGTAGGGGAGAATATGCAGACTAGTGTTATCTCCACCAATGCGGTGTCTTCAGAAAATTTTCTTGAGTATCAAATTACAAAGGAGAAACCAAAGCTTTCTTCTGTAGAGTCCAAGAAGAAAAAGAAAACAAAGGCTCCACTTCCGGCTGCTCCAGGAGATGAGCATGCTTTGGTACCTGTTAAGAAATGTACCCATTGTGAGATGACGAAGACTCCACAATGGAGGGCAGGTCCAAAGGGGCCCAAAACACTCTGCAATGCTTGCGGTGTTCGCTTCAAGTCAGGCCGACTTTGCGCTGAATACCGACCTGCTGCTAGCCCGACTTTTTGTCCATATTTGCACTCCAACTCCCACAAGAAGATCCTTGAAATGAGACGCCAGAATAAGAATTCTGCCGACGCCAACGTCACCGTCATTTCTCTACACCACGTTTTATCCACCCACATCACCAAGATCATCGAATACCAAACTCTCTCCGACGACGGCAAGGTGAAGAAATTCTCCGTGGAGGAACTGAATAACGATGAGTTGAAGGATTTTCTTCTTGCAGTGCATTACTTGGATATGGAGAGTCTTTTTGAGTTTCTGACTGAGGCTGTTGCGGATAGGATTAAGCATAAGAGTGTTGGGTATGTGCGGAAGTATTTTGGTGTTGAGAATGATCTTACGCCGGAGGAAGAGGCTGAAATTCGTCAAAGGAATGAATGGGCTTTTAAAGGTGGAGAAGTCGAACCTGAGGAGGAATGA 1215 0.4428 MVGTNFSEIDCNLFDNKVDLYEYDNIFNYPINVDASSLQFPVENWYSLANIWPNEYDSVISDNTSDLYLPSNDILSLEWLSNNVDDSFCEESLIEKKLEQQPASSVNKEDFVLLESSSSHTGGKTTVRRTRSKRPRPATFNPSRSIMQLISTTSSFVGENMQTSVISTNAVSSENFLEYQITKEKPKLSSVESKKKKKTKAPLPAAPGDEHALVPVKKCTHCEMTKTPQWRAGPKGPKTLCNACGVRFKSGRLCAEYRPAASPTFCPYLHSNSHKKILEMRRQNKNSADANVTVISLHHVLSTHITKIIEYQTLSDDGKVKKFSVEELNNDELKDFLLAVHYLDMESLFEFLTEAVADRIKHKSVGYVRKYFGVENDLTPEEEAEIRQRNEWAFKGGEVEPEEE* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g0150 404 CDD ZnF_GATA 218 265 IPR000679 GO:0006355|GO:0043565
Mal8g0150 404 PANTHER GATA TRANSCRIPTION FACTOR 8 1 290 - -
Mal8g0150 404 MobiDBLite consensus disorder prediction 187 209 - -
Mal8g0150 404 Pfam GATA zinc finger 219 252 IPR000679 GO:0006355|GO:0043565
Mal8g0150 404 MobiDBLite consensus disorder prediction 187 204 - -
Mal8g0150 404 ProSitePatterns GATA-type zinc finger domain. 219 244 IPR000679 GO:0006355|GO:0043565
Mal8g0150 404 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 276 - -
Mal8g0150 404 Pfam Skp1 family, dimerisation domain 347 393 IPR016072 GO:0006511
Mal8g0150 404 SUPERFAMILY Skp1 dimerisation domain-like 328 393 IPR036296 GO:0006511
Mal8g0150 404 MobiDBLite consensus disorder prediction 118 141 - -
Mal8g0150 404 Gene3D - 216 263 IPR013088 GO:0006355|GO:0008270
Mal8g0150 404 PANTHER GATA TRANSCRIPTION FACTOR 1 290 - -
Mal8g0150 404 Gene3D Potassium Channel Kv1.1; Chain A 268 395 IPR011333 -
Mal8g0150 404 ProSiteProfiles GATA-type zinc finger domain profile. 217 249 IPR000679 GO:0006355|GO:0043565
Mal8g0150 404 SMART GATA_3 213 263 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g0150 Mal-Chr8 2442388 2448071 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g0150 60 287 C2C2-Gata Transcription Factor Family AT5G25830 40.756 3.05e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal8g0150 Skp1 5.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g0150 - - gmx:100815693 269.24