Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g0149 ATGAGCAACGACATTCTTTCATTGGAATGGTTGTCCAATAATGTGGATGATTCATTTTGTGAGGAGAGTCTCATAGAAAAGAAATTAGAGCAACAACCAGCATCATCAGTCAACAAGGAGGATTTTGTGCTCCTTGAAAGCAGTAGTTCACACACTGGTGGAAAGACCACAGTGAGACGTACACGTTCCAAGCGTCCACGTCCTGCAACCTTCAATCCATCTCGTTCAATCATGCAACTCATTTCTACTACTTCCTCTTTTGTAGGGGAGAATATGCAGACTAGTGTTATCTCCACCAATGCGGTGTCTTCAGAAAATTTTCTTGAGTATCAAATTACAAAGGAGAAACCAAAGCTTTCTTCTGTAGAGTCCAAGAAGAAAAAGAAAACAAAGGCTCCACTTCCGGCTGCTCCAGGAGATGAGCATGCTTTGGTACCTGTTAAGAAATGTACCCATTGTGAGATGACGAAGACTCCACAATGGAGGGCAGGTCCAAAGGGGCCCAAAACACTCTGCAATGCTTGCGGTGTTCGCTTCAAGTCAGGCCGACTTTGCGCTGAATACCGACCTGCTGCTAGCCCGACATTTTGTCCATATTTGCACTCCAACTCCCACAAGAAGATCCTTGAAATTAGACGCCAGAATAAGAATTCTGGTATTCTTGCCTTGGAATACATATGA 681 0.4391 MSNDILSLEWLSNNVDDSFCEESLIEKKLEQQPASSVNKEDFVLLESSSSHTGGKTTVRRTRSKRPRPATFNPSRSIMQLISTTSSFVGENMQTSVISTNAVSSENFLEYQITKEKPKLSSVESKKKKKTKAPLPAAPGDEHALVPVKKCTHCEMTKTPQWRAGPKGPKTLCNACGVRFKSGRLCAEYRPAASPTFCPYLHSNSHKKILEIRRQNKNSGILALEYI* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g0149 226 MobiDBLite consensus disorder prediction 118 140 - -
Mal8g0149 226 Gene3D - 146 218 IPR013088 GO:0006355|GO:0008270
Mal8g0149 226 Pfam GATA zinc finger 150 183 IPR000679 GO:0006355|GO:0043565
Mal8g0149 226 MobiDBLite consensus disorder prediction 118 135 - -
Mal8g0149 226 SMART GATA_3 144 194 IPR000679 GO:0006355|GO:0043565
Mal8g0149 226 ProSiteProfiles GATA-type zinc finger domain profile. 148 180 IPR000679 GO:0006355|GO:0043565
Mal8g0149 226 ProSitePatterns GATA-type zinc finger domain. 150 175 IPR000679 GO:0006355|GO:0043565
Mal8g0149 226 PANTHER GATA TRANSCRIPTION FACTOR 3 218 - -
Mal8g0149 226 PANTHER GATA TRANSCRIPTION FACTOR 8 3 218 - -
Mal8g0149 226 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 149 207 - -
Mal8g0149 226 MobiDBLite consensus disorder prediction 45 72 - -
Mal8g0149 226 CDD ZnF_GATA 149 196 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g0149 Mal-Chr8 2388827 2390363 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g0149 2 218 C2C2-Gata Transcription Factor Family AT5G25830 40.625 6.84e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal8g0149 GATA 4.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g0149 - - mtr:MTR_1g116010 279.641