LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal8g0139	ATGATGACCCATACAATGGCCTGTAATGTGCACAGAGTGCAGAATCTTTCAGCATCTTATCTGACACACAAATGGGCGCAGTCACAGCAGAATATAGTATGGTCCAGTAAGATTCGAAGTGGAAAACTGAAACCCTTGGATGCTTTCTTAAAACGTGCTGATGATATTTTAGACTTCATGAAGCAACAGGGGTGTGCCACCATTGGAGAGGTGGAATACCATAGAGGTTCGCGGAAGCAAAAAGTTGAAGTTGGAAGCCTTTTCCGTATAAAGGACTTTAAAAGTTTTAACGTGGAAGTCCTTCTAAAATCTATGCGTCATAAGTTTGACACCAAAGAAGAGATCTTAGAATCGGAGATATTAAAGTCTCCGTTTCTGGTTTTATTGGATGGCAGAAAGTGGGACGGATTTGAGTTTCACAACAACATGGTAAATGAAGGGAAGGCATCTAGTGACTTAAATAAGTTCGCTATTGCAGCTGGAATAGGAATGCAAAATTCAATACCCTATTGGACCTTTGGTGCTTTTTTTGATAATGAATTTCGTTTCGTCCGTATTAGAAGAAAGCTAGACTGTTTTGGATTAGCATCTTATATATGGATCCCATTGCTTGGTGCTGATGGCGGACAAACAAGTTATAAGAAGACAAAGAGGGAGGTACATTCAAGATTGCGAACTCGAGCTGCAGGTAAAGGCGGTGGTTCCAACTTCACCGGTGAAGGAGGTGTTGCATTGGCTATGTATAACACTGATGAGTCTATTCATTCTTTTGCTGAGGCGTCTATGGCAGTAGCTTATCAGAAAAAATGGCCACTTTATGTTGATGAGACTAATGATCAAGTTACAATTGAAAGTGCGGAAGCAATTCTGAATACTAAAAGACTTCTTTTTTGCGGACTAGAAAGACTAGTCGAGATGGCGAAGTTCACAACTGATGAGTTACGCCGCATTATGGACTACAAGCACAACATTCGTAATATGTCTGTCATTGCTCATGTTGACCACGGAAAATCTACTCTAACTGACTCTCTAGTCGCTGCTGCGGGAATTATTGCCCAGGAAGTTGCAGGTGATGTCCGTATGACGGACACCCGTGCTGATGAAGCTGAGAGTGGTATTACAATCAAGTCTACCGGTATCTCACTCTACTATGAAATGACTGATGAGTCTCTCAGTAGGTACAAGGGGGAGCGCAATGGAAATGAGTACCTCATTAATCTCATTGATTCCCCTGGGCACGTTGACTTCTCATCTGAGGTTACTGAGGCACTCCGTATTATTGACGGAGCACTTGTGGTGGTTGACTGTGTGGAAGGTGTTTGTGTCCAAACTGAAACTGTGCTGCGACAAGCTCTTGGAGAAAGGATCAGGCCTGTTCTTACAGTTAATAAGATGGACAGATGCTTCCTTGAGCTCCAGGTTGATGGAGAGGAGGCCTACCAGACCTTTCAAAGGGTGATTGAGAATGCTAATGTGATTATGGCTACATATGAAGATCCACTTCTTGGTGACGTTCAGGTGTACAACACTCGATTCATTTTTTATTTTTTTTAA	1554	0.4228	MMTHTMACNVHRVQNLSASYLTHKWAQSQQNIVWSSKIRSGKLKPLDAFLKRADDILDFMKQQGCATIGEVEYHRGSRKQKVEVGSLFRIKDFKSFNVEVLLKSMRHKFDTKEEILESEILKSPFLVLLDGRKWDGFEFHNNMVNEGKASSDLNKFAIAAGIGMQNSIPYWTFGAFFDNEFRFVRIRRKLDCFGLASYIWIPLLGADGGQTSYKKTKREVHSRLRTRAAGKGGGSNFTGEGGVALAMYNTDESIHSFAEASMAVAYQKKWPLYVDETNDQVTIESAEAILNTKRLLFCGLERLVEMAKFTTDELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAESGITIKSTGISLYYEMTDESLSRYKGERNGNEYLINLIDSPGHVDFSSEVTEALRIIDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYNTRFIFYFF*	518

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal8g0139	517	TIGRFAM	small_GTP: small GTP-binding protein domain	325	481	IPR005225	GO:0005525
	Mal8g0139	517	Gene3D	-	308	516	IPR027417	-
	Mal8g0139	517	PANTHER	OS01G0742200 PROTEIN	306	511	-	-
	Mal8g0139	517	PANTHER	TRANSLATION ELONGATION FACTOR-RELATED	306	511	-	-
	Mal8g0139	517	PRINTS	GTP-binding elongation factor signature	326	339	IPR000795	GO:0003924\|GO:0005525
	Mal8g0139	517	PRINTS	GTP-binding elongation factor signature	406	416	IPR000795	GO:0003924\|GO:0005525
	Mal8g0139	517	PRINTS	GTP-binding elongation factor signature	370	378	IPR000795	GO:0003924\|GO:0005525
	Mal8g0139	517	PRINTS	GTP-binding elongation factor signature	422	433	IPR000795	GO:0003924\|GO:0005525
	Mal8g0139	517	PRINTS	GTP-binding elongation factor signature	458	467	IPR000795	GO:0003924\|GO:0005525
	Mal8g0139	517	ProSiteProfiles	Translational (tr)-type guanine nucleotide-binding (G) domain profile.	322	517	IPR000795	GO:0003924\|GO:0005525
	Mal8g0139	517	Pfam	Elongation factor Tu GTP binding domain	322	486	IPR000795	GO:0003924\|GO:0005525
	Mal8g0139	517	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	309	513	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal8g0139	Mal-Chr8	2214731	2218985	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal8g0139	306	516	Eukaryotic Initiation Factors Gene Family	AT1G56070	90.521	1.65e-128	393

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal8g0139	K03234		-	oeu:111372993	380.178