Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g0070 ATGATTGCCGCAATTTCGTGGATTCCCAAAGGGGTTTCAAAAGCTGAACCCGTTTTTGCTGAACTTCCTTCTAAAGATCATATCGAAGAAATCATCTCCAATACTATCACTAGCGTAGAAGAAGAAGATGAGAATGAAGAAGACGCTAACAAACAGAACGATGAAGTCGCACATGCTTTAACTGTCGCTGATGCAATTGGTAAACCATCCAATGAAATTAGTGATGATATTACCGCCGCCTTGAAGGATCTCAACATGGATAACTATGATGAAGAGGATGACAAAGGGTTTGAGTTATTCAGTTCGGGGAATGGTGATCTTTTTTATCCGAGTAATGAACTGGATCCATATATCAAAGATAAGAATGAGGAGTATGATTCTGAAGATCTTGAAGACATGATTATTAATCCAACTGATTCTGTTGTTGTTTGTGCGCGTACTGAAGACGATGTCAATTTTCTTGAAGTTTGGATACTTGAGGACGCCAATACCCGTGATATGAACTTGTATATTCACCATGATATTATTATTCCGGAATTTCCACTATGCACGGCTTGGCTTGATTGCCCCCTTAAAGGAGGAGAAAAAGGGAACTTCTTGGCTGTTGGTTCAATGGGGCCATCCATTGAAATTTGGGACCTTGATGTTATTGATGAGGTAGAGCCATGTGTGGTGTTGGGTGGCAAAGAGAAAAGGAAAAAGGGGAAAAATGGGAAAAAGAAATCAATAAAATACAAAGAGGGCAGTCACACTGACTCAGTACTTGGTCTTGCTTGGAACAAGGAATATAGTAATACACTTGCAAGTGCCAGTGCTGACAAGCGAGTGAAGATTTGGGATGTTGTTGCTGGAACGTGTACTATTACAATGGATCATCACTCTGATAAGGTTCAAGCAGTTGCTTGGAATCATCGTGCACAACAGATCCTTCTTAGTGGTTCGTTTGATCACACTGTTGCCTTGAAGGATGTAAGGACGCCGTCGCATTCTGGCTATACGTGGTCGGTTAGCGCTGATGTAGAGAGCTTGGAATGGGATCCACACACTGAGCACTCTTTTGTGGTGAGTCTTGAGGATGGTACGATCCAATGTTTTGATGTTCGGACTGCAATGTCCAATGCGACATCTGTGCAGAATGCTACTTTTACACTTCATGCACACGATAAACCTGTTACCTCCGTATGCTATAATATGGCAGCACCTAATCTTCTTGCGACTGGATCCACGGATAAAACGGTAAAACTTTGGGATTTGTCCAACAACCAACCATCTTGTGTTGCATCTAAAGAGCCAAAAGCTGGGGCTGTGTTTTCTATCTCTTTCTCAGTTGACAACCCATTCTTGTTGGCTATAGGAGGCTCAAAGGGAAAATTACAATTATGGGATGCCTTATCTGACGAAGGAATCTCTCGAAGATACGGGAAATACAACAGGAATCAACCTCAATCCGGGGCATGA 1458 0.4211 MIAAISWIPKGVSKAEPVFAELPSKDHIEEIISNTITSVEEEDENEEDANKQNDEVAHALTVADAIGKPSNEISDDITAALKDLNMDNYDEEDDKGFELFSSGNGDLFYPSNELDPYIKDKNEEYDSEDLEDMIINPTDSVVVCARTEDDVNFLEVWILEDANTRDMNLYIHHDIIIPEFPLCTAWLDCPLKGGEKGNFLAVGSMGPSIEIWDLDVIDEVEPCVVLGGKEKRKKGKNGKKKSIKYKEGSHTDSVLGLAWNKEYSNTLASASADKRVKIWDVVAGTCTITMDHHSDKVQAVAWNHRAQQILLSGSFDHTVALKDVRTPSHSGYTWSVSADVESLEWDPHTEHSFVVSLEDGTIQCFDVRTAMSNATSVQNATFTLHAHDKPVTSVCYNMAAPNLLATGSTDKTVKLWDLSNNQPSCVASKEPKAGAVFSISFSVDNPFLLAIGGSKGKLQLWDALSDEGISRRYGKYNRNQPQSGA* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g0070 485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 384 422 - -
Mal8g0070 485 ProSitePatterns Trp-Asp (WD) repeats signature. 267 281 IPR019775 -
Mal8g0070 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 384 426 IPR001680 GO:0005515
Mal8g0070 485 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 1 475 IPR044285 GO:0006364
Mal8g0070 485 Gene3D - 50 333 IPR015943 GO:0005515
Mal8g0070 485 PRINTS G protein beta WD-40 repeat signature 404 418 IPR020472 -
Mal8g0070 485 PRINTS G protein beta WD-40 repeat signature 449 463 IPR020472 -
Mal8g0070 485 PRINTS G protein beta WD-40 repeat signature 267 281 IPR020472 -
Mal8g0070 485 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 475 - -
Mal8g0070 485 ProSitePatterns Trp-Asp (WD) repeats signature. 404 418 IPR019775 -
Mal8g0070 485 Gene3D - 334 478 IPR015943 GO:0005515
Mal8g0070 485 SUPERFAMILY WD40 repeat-like 196 467 IPR036322 GO:0005515
Mal8g0070 485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 281 - -
Mal8g0070 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 289 IPR001680 GO:0005515
Mal8g0070 485 SMART WD40_4 327 366 IPR001680 GO:0005515
Mal8g0070 485 SMART WD40_4 238 280 IPR001680 GO:0005515
Mal8g0070 485 SMART WD40_4 283 323 IPR001680 GO:0005515
Mal8g0070 485 SMART WD40_4 422 462 IPR001680 GO:0005515
Mal8g0070 485 SMART WD40_4 377 417 IPR001680 GO:0005515
Mal8g0070 485 Pfam WD domain, G-beta repeat 381 417 IPR001680 GO:0005515
Mal8g0070 485 Pfam WD domain, G-beta repeat 249 280 IPR001680 GO:0005515
Mal8g0070 485 Pfam WD domain, G-beta repeat 436 462 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g0070 Mal-Chr8 1332757 1342943 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g0070 265 462 U-box Gene Family AT2G33340 27.536 6.02e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g0070 K14791 - gmx:100807947 710.679