Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g0065 ATGAACCCTCCTCCTGTCACTGCTCCAGTTGCAAATTCAACACTGGAACCCCCCATCAGACATGATCTTGCTGTTGGTTCATCACATGAGACTTCAGCAGCGCCTGCAAATTTGCCTTCTGCGAGGAATGGTTCATCGCCTGCAAATTTGCCTTCAGCAGCGCCTGCAAATTTGCCTTCTGCGAGGAATGGTTCATCGCCACCTCAAATTTATGGCAATGAGACTGCAACAATGTTGCCTGACCAAACCAAAGTCATCAAAGCTTTGAGATGTGAAGTGTGTAAAATTGAAGTTAATAGCAAAAACTCTTATGAAAAGCACATAGCTGGAAAGAAACACAAGAAGAATTTGCAGGTACAGACTAATCCTACTATTGCATCTCATGCGGATGTGCAAACTGACACAAGTAGTATCCAAGGACAAGCGTTAATTGGTCCTGTAGCCGAACAATCAGAGCCTAAGAAACAGGTTGATTCTGTAAAGGTTTGCTCAACATGCAATGTTTTGTGCACTAGTCCAGATGCATATAACAAACATGTTGCTGGGAGAAAGCACACTGCTAAGGTTGCCTTGATGTCTAATAATGGCATTTGTCCATCTATTGCCGAATTCGAGGGTAACGGTGATGCTCCATTTCAAAAAGCTGCTAAGAAAATCAAGGTTGATAGATCTACATGGTGTGAAGTTTGCAAGATTAGTTGCACCAGCAGGGATGTCTACATTACACACTTAGTCGGTAAGAAACACTTGAAGAACTTAAAGAAACTGTCAGATCTGAAAATCGACGTTGACACTGGTGCCACTGCCACCGCAACAAATACTTTAATCGTGTCACAAGAAAAGCCAGATTCCGGTGCCACTGCCACCGCATCAAATACTTTAATCGGGCCAGAGGAAAAGCCAGATTCTGATGAACCAAAACCAAAGAAGAAACGTAAAGTTGTGGAAGGAGGAGCTGCATTTGATGGTTTTAAAATGTGCACTTTATGCACTGTGCTGTGTAATAGCCAGACAGTTTTCGATTCTCACCTTATTGGCCATAAGCATACTGCTATGGTGAAGAAGGCAGCAGGGTCAATCACTGGTTGA 1089 0.4316 MNPPPVTAPVANSTLEPPIRHDLAVGSSHETSAAPANLPSARNGSSPANLPSAAPANLPSARNGSSPPQIYGNETATMLPDQTKVIKALRCEVCKIEVNSKNSYEKHIAGKKHKKNLQVQTNPTIASHADVQTDTSSIQGQALIGPVAEQSEPKKQVDSVKVCSTCNVLCTSPDAYNKHVAGRKHTAKVALMSNNGICPSIAEFEGNGDAPFQKAAKKIKVDRSTWCEVCKISCTSRDVYITHLVGKKHLKNLKKLSDLKIDVDTGATATATNTLIVSQEKPDSGATATASNTLIGPEEKPDSDEPKPKKKRKVVEGGAAFDGFKMCTLCTVLCNSQTVFDSHLIGHKHTAMVKKAAGSITG* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g0065 362 PANTHER SI:CH211-197H24.6 114 357 - -
Mal8g0065 362 PANTHER ZINC FINGER RNA-BINDING PROTEIN 114 357 - -
Mal8g0065 362 MobiDBLite consensus disorder prediction 278 314 - -
Mal8g0065 362 Pfam Zinc-finger of C2H2 type 327 349 - -
Mal8g0065 362 Pfam Zinc-finger of C2H2 type 162 185 - -
Mal8g0065 362 Pfam Zinc-finger of C2H2 type 226 249 - -
Mal8g0065 362 Pfam Zinc-finger of C2H2 type 90 113 - -
Mal8g0065 362 MobiDBLite consensus disorder prediction 30 74 - -
Mal8g0065 362 MobiDBLite consensus disorder prediction 1 74 - -
Mal8g0065 362 MobiDBLite consensus disorder prediction 298 314 - -
Mal8g0065 362 SUPERFAMILY beta-beta-alpha zinc fingers 321 355 IPR036236 -
Mal8g0065 362 Gene3D Classic Zinc Finger 74 120 - -
Mal8g0065 362 Gene3D Classic Zinc Finger 210 256 - -
Mal8g0065 362 Gene3D Classic Zinc Finger 303 356 - -
Mal8g0065 362 PANTHER SI:CH211-197H24.6 78 119 - -
Mal8g0065 362 SUPERFAMILY beta-beta-alpha zinc fingers 221 256 IPR036236 -
Mal8g0065 362 MobiDBLite consensus disorder prediction 278 296 - -
Mal8g0065 362 PANTHER ZINC FINGER RNA-BINDING PROTEIN 78 119 - -
Mal8g0065 362 SUPERFAMILY beta-beta-alpha zinc fingers 64 119 IPR036236 -
Mal8g0065 362 SMART c2h2final6 89 113 IPR013087 -
Mal8g0065 362 SMART c2h2final6 325 347 IPR013087 -
Mal8g0065 362 SMART c2h2final6 161 185 IPR013087 -
Mal8g0065 362 SMART c2h2final6 225 249 IPR013087 -
Mal8g0065 362 SUPERFAMILY beta-beta-alpha zinc fingers 143 192 IPR036236 -
Mal8g0065 362 SMART ZnF_U1_5 86 120 IPR003604 GO:0003676|GO:0008270
Mal8g0065 362 SMART ZnF_U1_5 322 356 IPR003604 GO:0003676|GO:0008270
Mal8g0065 362 SMART ZnF_U1_5 222 256 IPR003604 GO:0003676|GO:0008270
Mal8g0065 362 SMART ZnF_U1_5 158 192 IPR003604 GO:0003676|GO:0008270
Mal8g0065 362 Gene3D Classic Zinc Finger 147 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g0065 Mal-Chr8 1271577 1275647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g0065 158 361 C2H2 Transcription Factor Family AT5G61190 26.699 1.77e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal8g0065 zf-met 2.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g0065 - - cam:101495339 336.265