Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g0030 ATGTCACTCTGCTACCTTAAGTCAATTCCTGGTTTGCTTTCAAAGGTTCCAGTGCTTGTCATGCAAAGACCTGGAATGATGGCACAACCTCAACCACCACAAGCATTGATGCAAAACAACTATGTAGAAACAGTGATTCATGAAAGGTTGAAAAGTGTAAGGATTGCATGGATTCATGGAGGCACCAATGTTGCTATTGCAGGATCATGGAACAATTGGGAGACAATGGAAGCCTTGCTGAAAGTAGGTCAAAATTTTGTCATTGTTAAAACACTTCCAATTAGTATCTATTATTACCGTTTCATTGTTGATGGTCAATGGACACATGCTCCAGAGTTTCCATCAGATCTTGATGATTCTGGTTATGTCTACAACATATTGGATTTGCAGGATTATATCCCACAAAGACTACAAAAATCTGAAGATCCACAATCGCCGCCATCGAGTTACGATAATATATTCTTAAATGAAGATGATTTCAACAAGCCTCCCCCAGAATTACCACCACAAATACCAGTGACAATAACACAAGAAGAGGCTAATACTGATGAAGTCCCTAGTTTCACACATGTGGATTTGAATCATCTATACATAAACAAATCTGATGGAGAACAATTTGTGGCACTAAGATCAACTCATAGATTTCAACAAAAATTTGTCACTACAGTACTTTACAAGTCCCTTCACAGGGAAAGATGA 699 0.382 MSLCYLKSIPGLLSKVPVLVMQRPGMMAQPQPPQALMQNNYVETVIHERLKSVRIAWIHGGTNVAIAGSWNNWETMEALLKVGQNFVIVKTLPISIYYYRFIVDGQWTHAPEFPSDLDDSGYVYNILDLQDYIPQRLQKSEDPQSPPSSYDNIFLNEDDFNKPPPELPPQIPVTITQEEANTDEVPSFTHVDLNHLYINKSDGEQFVALRSTHRFQQKFVTTVLYKSLHRER* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g0030 232 SMART AMPKBI_2 143 228 IPR006828 GO:0005515
Mal8g0030 232 PANTHER SNF1-RELATED KINASE REGULATORY SUBUNIT BETA-2 14 232 - -
Mal8g0030 232 SUPERFAMILY E set domains 50 130 IPR014756 -
Mal8g0030 232 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 161 226 IPR006828 GO:0005515
Mal8g0030 232 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 14 232 IPR043554 -
Mal8g0030 232 Gene3D Immunoglobulins 45 132 IPR013783 -
Mal8g0030 232 Gene3D - 137 228 - -
Mal8g0030 232 CDD E_set_AMPKbeta_like_N 52 128 - -
Mal8g0030 232 SUPERFAMILY AMPKBI-like 133 227 IPR037256 -
Mal8g0030 232 Pfam Glycogen recognition site of AMP-activated protein kinase 53 130 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g0030 Mal-Chr8 610532 613303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g0030 52 131 Protein tyrosine phosphatase (PTP) family AT3G01510 34.940 6.89e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g0030 K07199 - gmx:100786269 294.278