Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g0016 ATGGCGAACACAAATCCTCTTCCCTGTGACGCTGACGGTGTATGCATGGTGTGCAAAACCAAACCACTCGAAACCGAAACACTTCATTGCAAAACCTGCGTCGCACCATGGCATAGTCTTTGTCTTCCCGTTATTCCAACCACAATTCTCGATTGGATTTGTCCTGATTGTTCTGAACCTAGTGATGTTGTTGCTGCTGCTTCTGCTCCTTCTGTTGCTGGAGATCTTGTTTCCGCTATTCGCGCTATTGAGAATGATTCTTCGCTTACTGAGGAAGAGAAGAGGAAGAAGCGTCAAGAGCTTCATGGTGGATCTTCGAAACAAAGCGATGAAATTGTTCATAGGAGGAGTGGTGTTCTTGATATCTTTGATGGAAGTCTTAATTGCTCGTTCTGTATGCAGTTGCCTGAGAGACCTGTTACTACTCCATGTGGGCACAACTTTTGCTTGAAGTGTTTTGAGAAATGGGTTGGGCAAGGAAAACGAACTTGCTCGAATTGTAGGACTGCAATTCCACCGAAAATGGCGAGCAATCCAAGAATCAATGCACAATTGGCGATTGCAATTCGTATGGCTAAGCTAGCTAGAGCAGAGAATGTCGGAGGAAGCACTGCTCCAAAGGCTTATCATGTTGTTAACAATGATGAGCGTCCCGACACTTGCTACACCACTGAGAGAGCAAAGAAAACAGGAAAGGCTAATGCTTGCAGTGGAAAAATCTTTGTTACAATTCCAAAAGATCATTTTGGACCAATCCTTGCTGAGTATGATCCTAATAGGAACCGTGGGGTTCTTGTTGGTGATACTTGGGAGGATAGGATGGAATGTAGGCAATGGGGAGCTCATTTTCCCCATGTTGCTGGCATTGCTGGTCAGAGCACTCACGGGGCTCAATCTGTTGCTCTCTCGGGTGGTTATGTTGATGATGAGGATCACGGTGAATGGTTCCTTTACACCGGAAGCGGTGGAAGGGACCTTAGTGGTAACAAACGTACCAACAAAAACCAGTCCTTTGATCAGAAGTTTGAGAATATGAACGAGGCATTGAGAGTCAGTTGCAAAAAAGGCTATCCCGTTCGTGTTGTTAGGTCCCACAAGGAGAAACGTTCCTCTTATGCTCCGGAAGCAGGAGTAAGATATGATGGGGTTTACAGAATTGAGAAATGTTGGCGCAAAGTTGGAATACAAGGTCATAAGGTCTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCTGCTCCATGGACAAGTGATTTAACTGGAGATCGTCCCCGTCCACTACCTACAATTAAGGAGTTTAAAGGTGCAGTGGATATTACTGAAAGAAAGGATGATCCATCATGGGACTTTGATGAGGAAAAGGGCTGTTGGTTGTGGAAGAAACCTGCACCAGTAAGTAAGAAGCCGATGAACATTGTGGATCCTTTTGATCCAACAAAAATTAAAGTTGTTATGCCAACAGCCAAAAAGGTGTCCTTCAAAATCAAGGATAGGCTATTGAAAGAGTTTGGTTGTAATATCTGTCGCAAGGTGTTGGCTTCCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGGCTGCTTGGAGGGTGCCTTTTCTGGCCAAAGCTATATCAGGAACAGGACGACTCAAAGTGGACGCAGTTTGCGGACACAGAAGAACATTATGAAATGTCCTACTTGTGCAACTGACATAGCTGATTATCTTCAGAATCCACAGGTTAACAGAGAAATGATGGGTGTGATAGAAACACTCCAGCGACAGGCTGAACAACAGGAAGCACAGATGGAGGAGAATTCTGGAGAATCTAGTGCCAAGAGTGAAGAAAATCACAAGCCAGATGAGGAGACGGAGGTCTCAAAGTCCTCTGATTCGAGTGAAAAAGTCTTGGAGGAAATTAACGAGGATGAGCTGAATCCTCCACAAAAGAAGAGGAAAGGTGCTGATGGCAAGGCTGTGGTGAATGCGGAGGAACATACTGATGAGGCAGGCGTGGAAAGCAAGACAGTGGCTTGTAACTAG 2025 0.4514 MANTNPLPCDADGVCMVCKTKPLETETLHCKTCVAPWHSLCLPVIPTTILDWICPDCSEPSDVVAAASAPSVAGDLVSAIRAIENDSSLTEEEKRKKRQELHGGSSKQSDEIVHRRSGVLDIFDGSLNCSFCMQLPERPVTTPCGHNFCLKCFEKWVGQGKRTCSNCRTAIPPKMASNPRINAQLAIAIRMAKLARAENVGGSTAPKAYHVVNNDERPDTCYTTERAKKTGKANACSGKIFVTIPKDHFGPILAEYDPNRNRGVLVGDTWEDRMECRQWGAHFPHVAGIAGQSTHGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKNQSFDQKFENMNEALRVSCKKGYPVRVVRSHKEKRSSYAPEAGVRYDGVYRIEKCWRKVGIQGHKVCRYLFVRCDNEPAPWTSDLTGDRPRPLPTIKEFKGAVDITERKDDPSWDFDEEKGCWLWKKPAPVSKKPMNIVDPFDPTKIKVVMPTAKKVSFKIKDRLLKEFGCNICRKVLASPLTTPCAHNFCKGCLEGAFSGQSYIRNRTTQSGRSLRTQKNIMKCPTCATDIADYLQNPQVNREMMGVIETLQRQAEQQEAQMEENSGESSAKSEENHKPDEETEVSKSSDSSEKVLEEINEDELNPPQKKRKGADGKAVVNAEEHTDEAGVESKTVACN* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g0016 674 ProSitePatterns Zinc finger PHD-type signature. 15 57 IPR019786 -
Mal8g0016 674 MobiDBLite consensus disorder prediction 588 602 - -
Mal8g0016 674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 67 IPR013083 -
Mal8g0016 674 Coils Coil 80 100 - -
Mal8g0016 674 SUPERFAMILY RING/U-box 497 588 - -
Mal8g0016 674 SUPERFAMILY PUA domain-like 233 429 IPR015947 -
Mal8g0016 674 SUPERFAMILY RING/U-box 121 176 - -
Mal8g0016 674 Pfam SAD/SRA domain 262 410 IPR003105 -
Mal8g0016 674 Coils Coil 576 603 - -
Mal8g0016 674 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 662 - -
Mal8g0016 674 MobiDBLite consensus disorder prediction 88 110 - -
Mal8g0016 674 SMART G9a_1 254 411 IPR003105 -
Mal8g0016 674 ProSiteProfiles YDG domain profile. 259 407 IPR003105 -
Mal8g0016 674 MobiDBLite consensus disorder prediction 588 674 - -
Mal8g0016 674 SMART ring_2 129 167 IPR001841 -
Mal8g0016 674 SMART ring_2 505 562 IPR001841 -
Mal8g0016 674 Gene3D - 230 424 IPR036987 -
Mal8g0016 674 MobiDBLite consensus disorder prediction 603 666 - -
Mal8g0016 674 SMART PHD_3 14 58 IPR001965 -
Mal8g0016 674 Pfam Zinc finger, C3HC4 type (RING finger) 127 171 - -
Mal8g0016 674 ProSiteProfiles Zinc finger RING-type profile. 505 562 IPR001841 -
Mal8g0016 674 ProSitePatterns Zinc finger RING-type signature. 520 529 IPR017907 -
Mal8g0016 674 Pfam RING-type zinc-finger 505 546 IPR027370 -
Mal8g0016 674 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 662 IPR045134 -
Mal8g0016 674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 614 IPR013083 -
Mal8g0016 674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 194 IPR013083 -
Mal8g0016 674 ProSiteProfiles Zinc finger RING-type profile. 129 168 IPR001841 -
Mal8g0016 674 SUPERFAMILY FYVE/PHD zinc finger 5 60 IPR011011 -
Mal8g0016 674 CDD RING-HC 129 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g0016 Mal-Chr8 303882 308278 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g0016 1 597 C2H2 Transcription Factor Family AT5G39550 60.099 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g0016 K10638 - gmx:100786796 940.258