Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal8g0006 | ATGGAGATGCAACAGCTTCTCAGCATGGGTTTTCCCGATGAGTTAGCTGCTCAAGCCTTAGCTGCTACCGGTGGTAAATCCACCGTCAAAGCCACCGAATGGATTCTTACTCATAAACCCCCCAATTCCACTATTAACACCCCTTCACCTTCACCACCATCACCTTCACCTTCTTCTTTCGCTTTTCAACCCCCCAACTCCACTATTCACACCCCTTCACCTTCTTCATGTGCTTTTCAACCCAAACTCGACCGTTTCTTCCAAACCCCACAACAACCCACTGAAGAAGATGAAGAACCAACCAAACGCATCAAGCTTTCACCAACACAAACATCCTCATTCTTCTTCAAACCAAGTTCCAAGAAACAACAACCTCAAACACAAACTCATGAACCATTGTACGAACGTCTTCGACCCAGAACACTCGACGATGTTGTCGGACAAGACCATCTCCTCTCAACAAACTCCATTCTCCGTTCATCAATTCAACGCAACCGTCTACCTTCAATCCTCTTGTGGGGTCCACCAGGCACAGGTAAAACCACCATAGCCAAAGCCATTGTTAATTCATCAACTTCAAGTTCTAATTTCCATCGTTTTGTATCTTTATCCGCGGTTACTAGCGGAGTTAAAGACGTTAGAGAAGCTGTTGATGAAGCTAGAAAAGTTAGAATCAAAACAAACCAAACTACTGTACTGTTTGTGGATGAGGTTCATAGGTTTAATAAGTCTCAACAAGATTCATTTTTACCTGTTATTGAAGATGGTAGTATTGTTTTTGTTGGTGCTACTACTGAAAATCCTTCTTTTCATTTGATTACACCGCTTTTGTCGCGTTGTCGTGTTCTTACTCTTAACCCTCTTCGACCCGAGCATCTGGTTTTGCTTCTTAACCGTGCTGTGGTTGATACAGATAAAGGGTTGGTGAAAAGCCTCGGTTTTGGTTCTGATTTTTCGGTTAATGTTAGTGTTGGGGAGGATGTGGTTGATTTTATAGCTAATAATTGCGATGGTGATGCTCGTGTTGCTTTGAATGTGTTAGAGATTGCTTCTGTAACCGCGGCTGCGCGAGTGGAGAATGATAATGAAGAATGTAAGGATGTTGTTGTTAGTGTTAGTGTTGAGGATGCAAAGGAGGCACTTCAATGCAAGCATCTTGCTTATGATAAAGCTGGGGAAGAGCACTATAATTTAATCAGTGCATTGCATAAGTCTATGAGGGGAAATGACGCTGATGCAGCGATTTATTGGTTAGCGAGAATGTTAAAAGGAGGTGAAGAGCCGCTTTATATTGCACGTAGGCTAGTACGATTTGCAAGTGAGGATGTTGGTTTGGCTGATCCTTTAGCTCTTAATCAAGCGGTTTCCTGTTACCAAGCTTGTCACTTTATAGGAGTGCCTGAGTGCAATGTGATTCTTGCACAATGTGTTGCTTACTTGGCTTTGGCTCCGAAATCTATAGCAGTTTATAGAGCAATGGGCGCTGCTGAGAAAGTTGTGAGCGAATCAGTTGGACAGAATGAAGGGGTGCCTCTTCATCTCAGGAATGCACCAACCAGATTAATGAAGGAAGTTGGGTATGGGAAGGGATACATATATACTCCTGACAACCCTTCCGCAACGCAAAACTTCTTGCCACCCTCCCTTCAAGGGTTCAAATTCCTACATTGGCCTGACAGGGATCCCTCTGAATCTGATAGATGA | 1704 | 0.4343 | MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKPPNSTINTPSPSPPSPSPSSFAFQPPNSTIHTPSPSSCAFQPKLDRFFQTPQQPTEEDEEPTKRIKLSPTQTSSFFFKPSSKKQQPQTQTHEPLYERLRPRTLDDVVGQDHLLSTNSILRSSIQRNRLPSILLWGPPGTGKTTIAKAIVNSSTSSSNFHRFVSLSAVTSGVKDVREAVDEARKVRIKTNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLRPEHLVLLLNRAVVDTDKGLVKSLGFGSDFSVNVSVGEDVVDFIANNCDGDARVALNVLEIASVTAAARVENDNEECKDVVVSVSVEDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGNDADAAIYWLARMLKGGEEPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFIGVPECNVILAQCVAYLALAPKSIAVYRAMGAAEKVVSESVGQNEGVPLHLRNAPTRLMKEVGYGKGYIYTPDNPSATQNFLPPSLQGFKFLHWPDRDPSESDR* | 568 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal8g0006 | 567 | MobiDBLite | consensus disorder prediction | 34 | 76 | - | - | |
| Mal8g0006 | 567 | MobiDBLite | consensus disorder prediction | 90 | 132 | - | - | |
| Mal8g0006 | 567 | Pfam | UBA/TS-N domain | 4 | 35 | IPR015940 | - | |
| Mal8g0006 | 567 | PRINTS | CbxX/CfqX superfamily signature | 169 | 184 | IPR000641 | GO:0005524 | |
| Mal8g0006 | 567 | PRINTS | CbxX/CfqX superfamily signature | 339 | 351 | IPR000641 | GO:0005524 | |
| Mal8g0006 | 567 | PRINTS | CbxX/CfqX superfamily signature | 220 | 239 | IPR000641 | GO:0005524 | |
| Mal8g0006 | 567 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 128 | 366 | IPR027417 | - | |
| Mal8g0006 | 567 | Pfam | MgsA AAA+ ATPase C terminal | 408 | 557 | IPR021886 | - | |
| Mal8g0006 | 567 | MobiDBLite | consensus disorder prediction | 45 | 60 | - | - | |
| Mal8g0006 | 567 | MobiDBLite | consensus disorder prediction | 61 | 76 | - | - | |
| Mal8g0006 | 567 | Gene3D | - | 486 | 565 | - | - | |
| Mal8g0006 | 567 | Gene3D | - | 2 | 55 | - | - | |
| Mal8g0006 | 567 | Gene3D | - | 119 | 286 | IPR027417 | - | |
| Mal8g0006 | 567 | SMART | AAA_5 | 166 | 288 | IPR003593 | - | |
| Mal8g0006 | 567 | CDD | AAA | 146 | 281 | - | - | |
| Mal8g0006 | 567 | PANTHER | WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER | 15 | 564 | - | - | |
| Mal8g0006 | 567 | Pfam | AAA C-terminal domain | 321 | 407 | IPR032423 | - | |
| Mal8g0006 | 567 | Gene3D | - | 288 | 370 | - | - | |
| Mal8g0006 | 567 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 392 | 561 | IPR008921 | GO:0003677|GO:0006260 | |
| Mal8g0006 | 567 | Gene3D | - | 382 | 485 | - | - | |
| Mal8g0006 | 567 | SUPERFAMILY | UBA-like | 3 | 42 | IPR009060 | GO:0005515 | |
| Mal8g0006 | 567 | CDD | HLD_clamp_RarA | 288 | 382 | - | - | |
| Mal8g0006 | 567 | MobiDBLite | consensus disorder prediction | 105 | 131 | - | - | |
| Mal8g0006 | 567 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 1 | 38 | IPR015940 | - | |
| Mal8g0006 | 567 | Pfam | ATPase family associated with various cellular activities (AAA) | 170 | 282 | IPR003959 | GO:0005524|GO:0016887 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal8g0006 | Mal-Chr8 | 147352 | 149055 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal8g0006 | 125 | 408 | Core DNA Replication Machinery Family | AT1G77470 | 24.483 | 3.77e-14 | 72.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal8g0006 | K07478 | - | gmx:100799257 | 797.734 |