Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g5430 ATGGAAAATCGTCAAAGAATAACACTTTACGATCAAATGAGTTCCACAAGCAACACTCGAAGTTCACTTGCTAGTTTAATCCAAAACGACGCCGTTTTATCCAACCAAAAAAACACAAACCAAACACTCTTAGATATTATACGAGAAAACGAACCAAACAACAACAACGTTGTTAATGTTATCAACAACAATAACAACAACAACAACGTTGTTAAAGATCGAATTTCATGGAAAGCTTTTAAGGAATTGCTTCGTCTCAAACGTCGTAACTCCGATGAGTCCACTCAGCAACAACAAAACGAGGATATTCCGAACAATTCAGATCCGACTGAGTTTCTTGCCGGCGGCGAGTTTTCCGACGAGACGGCGCAGGTTAGCTTGTCGTTGATGGATTTGTTGGAAGAGAGTGAAATTGAATTGGAACGAAGTAGTGATGTTGGTGATGACGTGGAAGAGAATCATGAGAAAGAGGAAGAAGAGGAAAGAGAAGAAGAAAAAGAAGAAGGAGAAGGGAGTAGTATTAGAGTGGAACACAATTGCTGCGTGTGTATGGTGAGGGATAAAGGTGCAGCGTTTATACCATGTGGACACACGTTTTGCAGGATGTGTTCAAGAGAGCTTTGGGTTAGTAGAGGGAATTGTCCTCTTTGCAATCATTTTATTTTAGAAGTTCTTGATATTTTCTGA 687 0.3988 MENRQRITLYDQMSSTSNTRSSLASLIQNDAVLSNQKNTNQTLLDIIRENEPNNNNVVNVINNNNNNNNVVKDRISWKAFKELLRLKRRNSDESTQQQQNEDIPNNSDPTEFLAGGEFSDETAQVSLSLMDLLEESEIELERSSDVGDDVEENHEKEEEEEREEEKEEGEGSSIRVEHNCCVCMVRDKGAAFIPCGHTFCRMCSRELWVSRGNCPLCNHFILEVLDIF* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g5430 228 CDD RING-HC 180 217 - -
Mal7g5430 228 PANTHER OS01G0917900 PROTEIN 2 108 - -
Mal7g5430 228 PANTHER OS01G0917900 PROTEIN 120 228 - -
Mal7g5430 228 MobiDBLite consensus disorder prediction 88 114 - -
Mal7g5430 228 MobiDBLite consensus disorder prediction 138 170 - -
Mal7g5430 228 PANTHER OS01G0917900 PROTEIN 120 228 - -
Mal7g5430 228 SMART ring_2 180 217 IPR001841 -
Mal7g5430 228 PANTHER OS01G0917900 PROTEIN 2 108 - -
Mal7g5430 228 Pfam Zinc finger, C3HC4 type (RING finger) 177 222 - -
Mal7g5430 228 Coils Coil 140 170 - -
Mal7g5430 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 228 IPR013083 -
Mal7g5430 228 SUPERFAMILY RING/U-box 179 224 - -
Mal7g5430 228 MobiDBLite consensus disorder prediction 141 167 - -
Mal7g5430 228 ProSiteProfiles Zinc finger RING-type profile. 180 218 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g5430 Mal-Chr7 125105849 125106535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g5430 3 228 C3H Transcription Factor Family AT3G25030 37.052 1.82e-41 140