Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g5324 ATGAGGCCAAACGCTGCGGCGGTGAAACAAGCCGAGCTTTTGAGAAACGACGGTAATCATTACTTCAAGAAAAACCGTTTCGGTGCCGCCATTGATGCTTACACTGAGGCAATTACGCTTTGCCCTAATGTTCCGGTTTATTTCACCAATCGTGCTTTGTGTCATCTCAAGCGAAATGAATGGGAGAGGGTTGAGGAAGATTCTAGAAGAGCAATTCAGCTGGACAGCAATTCGGTTAAGGCACACTATATGTTGGGTCTTGCATTGCTACAGAAACAAGAACATACGAAAGGAATCCGAGAATTGCAAAAGGCTTTGGATCTTGGGAGAGGTGCCAATCCAAAGGGCTATATGGTAGAAGAAATATGGCAAGAGTTTGCAAAGGCAAAATACAAGGAGTGGGAACGTTCCTCGTCCCAACGATCATGGGAATTGCAGAACTTGAAAGAAGCTTGTAAGTCTGCTCTAAAGGAAAAACATTTTCTTGGCTCTGAAATGGAAGGATTTGTAGATGATGCTACTACTTCCCATTTGAAACAGTTGGAGGCTGTAGAAAGAGTCTTCAATAAAGCTGCAGAGGATGACGTACCAACTGAGGTCCCCGATCATCTATGCTGTAGAATAACTCTTGATATTTTTCATGATCCTGTAATCACTCCTAGTGGACATACATATGAGAGAGCAGTGATTCTTGACCATCTTCAGAAGGTGGGTGAATTTGATCCGATCACGCGGGAACCACTTGATCCATCACAACTAGTATCAAACTTGGCCATTAGGGAAGCAGTCCACGAATATTTGGACAAACATGGGTGGGCTTACAAGATAGATTAA 834 0.4341 MRPNAAAVKQAELLRNDGNHYFKKNRFGAAIDAYTEAITLCPNVPVYFTNRALCHLKRNEWERVEEDSRRAIQLDSNSVKAHYMLGLALLQKQEHTKGIRELQKALDLGRGANPKGYMVEEIWQEFAKAKYKEWERSSSQRSWELQNLKEACKSALKEKHFLGSEMEGFVDDATTSHLKQLEAVERVFNKAAEDDVPTEVPDHLCCRITLDIFHDPVITPSGHTYERAVILDHLQKVGEFDPITREPLDPSQLVSNLAIREAVHEYLDKHGWAYKID* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g5324 277 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Mal7g5324 277 SUPERFAMILY TPR-like 9 108 IPR011990 GO:0005515
Mal7g5324 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 276 IPR013083 -
Mal7g5324 277 SMART Ubox_2 203 266 IPR003613 GO:0004842|GO:0016567
Mal7g5324 277 Gene3D Tetratricopeptide repeat domain 5 141 IPR011990 GO:0005515
Mal7g5324 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 5 276 IPR045200 GO:0000209|GO:0061630
Mal7g5324 277 CDD RING-Ubox_CHIP 200 266 IPR045202 -
Mal7g5324 277 Pfam Tetratricopeptide repeat 80 108 IPR019734 GO:0005515
Mal7g5324 277 Pfam Tetratricopeptide repeat 21 43 IPR019734 GO:0005515
Mal7g5324 277 PANTHER OS08G0113300 PROTEIN 5 276 - -
Mal7g5324 277 SMART tpr_5 45 78 IPR019734 GO:0005515
Mal7g5324 277 SMART tpr_5 11 44 IPR019734 GO:0005515
Mal7g5324 277 SMART tpr_5 79 112 IPR019734 GO:0005515
Mal7g5324 277 Pfam U-box domain 200 272 IPR003613 GO:0004842|GO:0016567
Mal7g5324 277 ProSiteProfiles U-box domain profile. 199 273 IPR003613 GO:0004842|GO:0016567
Mal7g5324 277 SUPERFAMILY RING/U-box 193 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g5324 Mal-Chr7 122976599 122980567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g5324 4 276 U-box Gene Family AT3G07370 66.788 3.99e-136 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g5324 K09561 - gmx:100796519 471.085