Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g5254 ATGACTTGCAACCCAAGAAATATGCATACTCTCCTCCACTCTGCTATCCGTTTCTTTAAGATTGTTACCTCAACAAATATTCAAGATGGAACCCTTAAAATTCCAAATGCTTTCACTAAGAAATATAGTGGTGATTTGCCAAACCCAATGTTTCTCAAAACTCCAGATGACAAAAAATGGGAAGTACATTTGACTAAAAAGGATGGTGATATTTGGATTCACAAGGGTTGGAAAGAATTTGCTACACATTATTCTTTAGATCATGGACACATGCTGGTGTTTCAATATGAAAAAGCCTCTCATTTTGATGTTTACATATTTAACAAGAGTACTATGGAAATTGAATATCATGTTAATGGTAGTAATCAACATAAACAGAACAACCTTGTTGAAAATTTGGATGAGCAAGTTACATGCAAGAAGACTAGACCAAAATCACAAATTTCAAATCCTCAACCACATAAGAAATTGAGAATTGGCTCAAGTGAAGATGTTGGAACAAGCTCCAAATTGACAAAAATTCATAAACTTGTCCAAGTTAAAGAGGAGATTGAAGATACCACTAAATGCCTAAATGTGAAGCATGATCAAGAGCAGAATTCAAAAATTGCTGAAGCTTTAAACAAAGCAAAAAACTACAAATCTAACAATCCCTTTTTCACTGTTGTCATTTCATATTCCTATGCTAATAACTACATGTATATCCCATCAGATTTTGAACAAAAGTATTTGAAGCAAAAACAAAGCGATATCGCCCTTCAGGTCTTGGATGATAAGAGAATTTGGAAAGTTAAACATTGTGGGAGACATATTAGTACTGGATGGAAAACATTTGCATCTGATAATAATTTGAAAGTGGGAGATGTTTGTCTTTTTGAGATGATCAAAAGAAATGCTTATACATTTAAAGTACTAATTTTTCGACTAGGCGAAGAACATTCCCTTCCACCACAAGTTAATGGAGATGGAGTTAATTGGGTTGAAACAGCAAGAATCCCTGAAGTTGAAAGTAAAACTATCATGCCATATAAAGGAAAGAAGGCAACTCAAAGTTCACTGAAGGCTATTTCATGTTCTTTCAAAAGTTCTGAAGTTAAGAAAGAAGCCAATCAATTCGCATCAACTCTGAAAAATCCATATTTCATTATCAATTTGAATTCAAGTCGTTGGGATGCTTACACACCGCGTATACACAAATCGTTCTCGAGGAAGTATTTGTGTCACAAGAAGATTGTAACGTTACAATTTAATAAAAAAAATTGGCATGTAAAATTGGTGAGAAATCCATCCGAACCGTCAACCAAGATGGGTGTAGGTTGGAGTCAGTTTGTAAAAGAAAATAAATTGCAGCTCGGAGATGAATGTGTTTTTGAACTCGTCAATAAGGAAGATCTTGTGCTTGATGTTCATAATTTCAGAGGCTGCAATTAG 1431 0.3424 MTCNPRNMHTLLHSAIRFFKIVTSTNIQDGTLKIPNAFTKKYSGDLPNPMFLKTPDDKKWEVHLTKKDGDIWIHKGWKEFATHYSLDHGHMLVFQYEKASHFDVYIFNKSTMEIEYHVNGSNQHKQNNLVENLDEQVTCKKTRPKSQISNPQPHKKLRIGSSEDVGTSSKLTKIHKLVQVKEEIEDTTKCLNVKHDQEQNSKIAEALNKAKNYKSNNPFFTVVISYSYANNYMYIPSDFEQKYLKQKQSDIALQVLDDKRIWKVKHCGRHISTGWKTFASDNNLKVGDVCLFEMIKRNAYTFKVLIFRLGEEHSLPPQVNGDGVNWVETARIPEVESKTIMPYKGKKATQSSLKAISCSFKSSEVKKEANQFASTLKNPYFIINLNSSRWDAYTPRIHKSFSRKYLCHKKIVTLQFNKKNWHVKLVRNPSEPSTKMGVGWSQFVKENKLQLGDECVFELVNKEDLVLDVHNFRGCN* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g5254 476 CDD B3_DNA 379 473 IPR003340 GO:0003677
Mal7g5254 476 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Mal7g5254 476 SUPERFAMILY DNA-binding pseudobarrel domain 377 475 IPR015300 -
Mal7g5254 476 Gene3D - 12 111 IPR015300 -
Mal7g5254 476 CDD B3_DNA 17 108 IPR003340 GO:0003677
Mal7g5254 476 MobiDBLite consensus disorder prediction 142 162 - -
Mal7g5254 476 CDD B3_DNA 218 308 IPR003340 GO:0003677
Mal7g5254 476 ProSiteProfiles B3 DNA-binding domain profile. 419 473 IPR003340 GO:0003677
Mal7g5254 476 PANTHER B3 DOMAIN-CONTAINING 346 473 - -
Mal7g5254 476 PANTHER B3 DOMAIN-CONTAINING 12 308 - -
Mal7g5254 476 SUPERFAMILY DNA-binding pseudobarrel domain 213 309 IPR015300 -
Mal7g5254 476 SMART B3_2 380 473 IPR003340 GO:0003677
Mal7g5254 476 SMART B3_2 219 310 IPR003340 GO:0003677
Mal7g5254 476 SMART B3_2 18 110 IPR003340 GO:0003677
Mal7g5254 476 Pfam B3 DNA binding domain 397 472 IPR003340 GO:0003677
Mal7g5254 476 Pfam B3 DNA binding domain 220 308 IPR003340 GO:0003677
Mal7g5254 476 Pfam B3 DNA binding domain 18 109 IPR003340 GO:0003677
Mal7g5254 476 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 346 473 - -
Mal7g5254 476 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 308 - -
Mal7g5254 476 Gene3D - 359 475 IPR015300 -
Mal7g5254 476 Gene3D - 198 311 IPR015300 -
Mal7g5254 476 SUPERFAMILY DNA-binding pseudobarrel domain 16 110 IPR015300 -
Mal7g5254 476 ProSiteProfiles B3 DNA-binding domain profile. 218 310 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g5254 Mal-Chr7 121764242 121767342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g5254 362 473 B3 DNA Binding Superfamily AT3G18990 31.897 1.11e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal7g5254 B3 1.8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g5254 - - mtr:MTR_8g103940 785.408