LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal7g5224	ATGCCATTATCATTCTCTATCTTCCCCTCACCACCAACACTTCAAAATCCTAACTCCAACCATGCCCACCTCTTCAATCCCATCAAATTCCCCAAATTCCATTTCAATTCTAGAAGAATCTCTTCACCACCACGCTCTCACCCCAACTTTCCCCATCTCTACAAAACCTCTTCCACTCTTCGCCGTAGAATTCCATGCACTAAAGCTTTGAAAGATTCCGGTGGTGGTGGTGGCGGTGGCGGTGGTGATGGTGGTGGTGACAGGGAGGTGGAGAAGAAAAATGGGTCGTCGGGTCCTTTTCCTGATTGGTTGAATTTCACTTCTGATGATGCCAAAACGGTTTTTGCTGCTCTTGCAATATCGCTTGCGTTTCGTACTTTCATTGCTGAGCCTAGGTTCATTCCTTCGTTGTCAATGTATCCTACTTATGATGTTGGAGATCGAATTGTTGCTGAAAAGGTTTCATATTATTTTAGAAAGCCGTGTGCAAATGATATCGTGATATTTAAAAGCCCTCCAGTCCTTCAAGAAGTTGGATATACTGATGATGATGTTTTCATTAAACGCGTTGTTGCAAAGGAAGGTGATATCGTAGAGGTTCGTAATGGGCATCTTGTAGTTAATGGGGTTGAAAGGGATGAGAAGTTTATCAATGAACAACCAAAGTATGAGATGAAACCCACACGTGTGCCAGAGAACTCCGTTTTTGTGATGGGAGACAACCGCAATAACAGCTACGACTCCCATGTGTGGGGTCCCCTGCCAGCCAAGAATATCATAGGTAGATCAGTATTCCGCTATTGGCCACCAAATAGAATTGCCGCCACAGTTGCTAAGGGAGGGTGCCCTGTTGAAACCAAGCAGGAGACTTCTAGTACTACTCTAGCATCTCAATGA	897	0.4459	MPLSFSIFPSPPTLQNPNSNHAHLFNPIKFPKFHFNSRRISSPPRSHPNFPHLYKTSSTLRRRIPCTKALKDSGGGGGGGGGDGGGDREVEKKNGSSGPFPDWLNFTSDDAKTVFAALAISLAFRTFIAEPRFIPSLSMYPTYDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDIVEVRNGHLVVNGVERDEKFINEQPKYEMKPTRVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIAATVAKGGCPVETKQETSSTTLASQ*	299

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal7g5224	298	Gene3D	Umud Fragment, subunit A	124	280	-	-
	Mal7g5224	298	ProSitePatterns	Signal peptidases I signature 3.	235	248	IPR019758	GO:0004252\|GO:0016021
	Mal7g5224	298	PANTHER	THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED	92	278	-	-
	Mal7g5224	298	MobiDBLite	consensus disorder prediction	68	96	-	-
	Mal7g5224	298	MobiDBLite	consensus disorder prediction	1	20	-	-
	Mal7g5224	298	PANTHER	SIGNAL PEPTIDASE I	92	278	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Mal7g5224	298	CDD	S26_SPase_I	130	262	IPR019533	GO:0004252\|GO:0006465
	Mal7g5224	298	SUPERFAMILY	LexA/Signal peptidase	125	274	IPR036286	-
	Mal7g5224	298	TIGRFAM	sigpep_I_bact: signal peptidase I	112	270	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Mal7g5224	298	Pfam	Signal peptidase, peptidase S26	111	268	IPR019533	GO:0004252\|GO:0006465
	Mal7g5224	298	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	186	198	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Mal7g5224	298	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	230	249	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Mal7g5224	298	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	127	143	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal7g5224	Mal-Chr7	121453870	121456623	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal7g5224	139	269	MADS-box Gene Family	AT1G29960	32.576	5.85e-12	60.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal7g5224	K03100		-	gmx:100815810	382.874

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal7g5224	7	121453870	121456623	Mal7g5224	7	121453870	121456623	ECH