Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g5214 ATGGACACCACCGTAACCGTCACAAAACGAGCTCAAATCCTCCGCCACGTCACGGCATTCATCACCGGCGTGATTCAACAATCACAACTCCGGCGCCAACTCATTGAAACTCTCCACCGCGAAACTCCAATCTCTAATCAAGTAACTCTAAAACAACTCAACCTCGCTGTAGACGCTGTCCAAACCGCCATTTCCTCATCCAGCTCCGCCATTCGTTCTTCCTCTCTCTCCCTCGCCGAGAAACTTCTCCTTCCTCTCCCTGAGTATCCTCTCTCCTTCTTCCTCCTCTCCCTTATTAACACTCTCCGTAACCGCTCCGACGAATCTGCAATCATCCTCCTCCGAATCTTCCATTCCAATCCTTCCCTCGCCCGATCTGAAATAGCACCGTCTCTTTATGAGAACCTCTTTTATCTTCACCTCTTCCCTGTTTTCCGGTGGTTCGATGAACAGAGAACGCGGATTTTGCCATCTGTTAATGAAACCTCGAGCCGCGACACCGGTGACTACTCCGCTTCAGATGATTTGGTTATGCCTTATGCGAAGTTGTTGTCGAATGTGAGTGGTGATCAAGCGTTAAAGCTGAGGGAGTTGGAGAGAGAGTATGAAGAGGTTTTGGATGAGAATTGTCGGGTTCTTGCTGTGTATTTTAAAAAGGTTTTGGTGAATAAAGATGAAGATGGGACTGTTAGTCCACCGTTGTTGATATTGAAGAGCGTTGCAAACGAAGGTGGTGGATTGCATAGAAAGGAGGAAATGCAAATGCCGCAGTTGGAGAACGGACGGTATAATCCAATGTGGTCTGAAAGGGATACGTCTAATGAATTTTTGAGCAGCAGTTCCAGCAGTAGATCCTCCCTCGCACTATTATATCCTCAAAGAGTCTCTCCCAGAGTCCTCCACCCCCTAAAATCTTCAAGATATTGGACAACACCGGCCTATTTAAACTCGGCCCTTGAAACTCAATTTTCTTTAGATGAGAATTCACTTTGTTCTTCTTCAGATTCTGAAGCTGAAAATGAGGAAAAAGACAAAGATATTGCATTGTTGGAGCCTCGACAAAGCCAAAGCCAAAACAAGGAACAAATGCAAACCATCTTCAAAGAATCCAGAGGCTCCCCAGATTATCCAATGGCAGACTACGAAAACACGCCACCACATGGAAGTGGGAAACAAACACCTCCTAAAGACTTTGTCTGTCCAATAACCAGTAACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAGACATATGAACGTAAAGCTATAGAGGAATGGTTCAATAGAGAGAACATAACTTGTCCTATCACTCGCCAGAAACTGCAAAACACCAAGCTACCTAAGACCAATTATGTGCTAAAAAGACTAGTTGCTAGCTGGAAAGAACGCAACCCCAGTTCAGTGCCTCCTACATGTGAGAGTCCAGACAAAGATACCGAGGCAGTAGTGAAGACAGAAATACCTTCAGCTTCTCCTAATAGTGTCATAACACAAGCCACCGTTGATGGGATGATTGGCGAGTTACGCTGTGCAATCAATAACCTGTACATGTCAGAGATTCTCCAGGAATCTGAAATGGCGGTTCTTCAAATTGAGAAGTTGTGGAGAGGAGGGAATTTGGGAGTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAACGGGTTTGTCGAGATACTTTTCAATTCTGTTGAACCCGAGGTGCTTCAGGCAGCTGTTTTCCTTCTGGCTGAGATGGGATCTAGAGACAATGCTATTATTCAGACTCTAACACGTGTAGATACCGACGTTGAATGTATAATGGCTCTTTTCAAGAAAGGGTTGACAGAGGCTGTTGTGCTATTGTATGTCCTAAACCCTTCCGCTGTGACTCTTACCGAGATGGCCATTGTGGAGTCTCTCATATCAGTTTTCAATAAGAAAGAGGAAGATTTAGTGCAGATGTGTTTAAATCCCAGAACAGCTGCAGTTCTTCTACTGGCACAGATTACTGGAAGCAGCGATGAGATAATTGCGTCTTCGGTTGTCAAGACTCTGTTCTCTGAAAAAGCAATTGGAGCTATTGTTGGCAGTTTGGGAGCTGAATGGACAGAAGAGAGGATTGCGGCAGTTGAAATCTTATTGAGATGCATGCAAGAGGATGGGACTTGCAGGAACACCATTGCTGATAAAGCAGAGCTGTCTCCTATTCTGGAATGCTTCATTCATGCAAGTGATGCAGAACGTTTCAAGATTGTTGAATTTTTTTCTGAGTTGATCAAACTAAATAGGAGAACATTCAATGAACGAATCCTCCACATTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACTCTTCTTATTCATTTGCAGACTGCCCTTCAAGATCAATGTCCTGTCATGGCCGGTCTCTTACTCCAACTTGATCTTCTGGTTGAACCAAGAAATATGAGCATATACCGTGAAGATGCGATAGATACTCTTATTTCATGCCTAAGGAACTCAGATTTCCCTACTACCCAGTTAGCAGCTGCTGATACAATCATGTCACTGCAAGGGAGGTTCAGCTTCTCTGGAAAGCCTCTTATTAGAGAAGTCCTTCTTAAACGTGCAGGTATTGACAAAGGTCCCAGAAGTGATGTACAGGTGGATCATATGAGCAACTTCTTCTCAGAAATCGAAATAACTCCAGAAGAAGAGAAGGCAGCTGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTTAGCCACGAGTTCGGTATACTTTTTGAAGCTTTGGCCGATGGCATGAAGAGCAGAATTTCAGAACTACGCTCAGCATGCTTCATATCAGCTACATGGCTCACATACATGCTGACCATTCTACCAGATACAGGGATACAAGGAGCAGCTCGTGTTTGTCTGCTAAAGCCGTTCGTAAATAAATTAAATTCTGCTAAGAATATAGAACACAGAATCCTTTCTATGCTTGCTCTCAATAGCTTTCTTCATTTCTCTGATGGCTTACGTGATCTAACTGCTTCATACGCTAAGGATATCTTAAAAGGTTTGAGAGAGCTAAAGAGATTCTCTCCCTTGGCATCTGAAATGCTGAAAGTTCTGGTTGATGAGAATGAGCCTAAAACAGATATTTGGAGACATAAAGAGCTAATCCAAGTCGATTGCAGAGGGAATGGAGAAGTATTGTCTATCATATGCGTCAAGGATAAAATTATTTCAGGCCATACAGATGGCAGCACCAAGGTCTGGACATTAAAGGATAGCTTATTACTTCTGTTGCAAGAGATCCAAGAACATACTAAGGCTGTGACAAACTTGACGATTTCAGAATCTGGTGATAGACTTTACAGTGGTTCACTTGACCGAACTGCAAAGATCTGGTCTATTGGAAAGGCAGCAATACATTGTGAGCAGGTGCATGATATGAAGGACCAGATTCATAATTTAGTTGTAACCAATAGTACAACTTGTTTCATTCCGCAGGGGGCTGGTGTCAAGGTTCAGTCGCTGAATGGAGAATCCAAGTTGTTAAATTCTAATAAATATGTGAAGTGCTTGGCTCATGCTCACGGGAGATTATACTGTGGATGCCACGACAGTAGTGTTCAGGAGATACATTTGGACACTGGAACTGTCAGTAATATTCAAAGTGGTTCTAAAAAATTACTTGGGAGAGCATATCCTATTCATGCACTGCAAGTTCGTGGTGAACTTATATATGCAGCTGGATCTTCCCTGGATGGAACTGCTATAAAGATATGGAACAATTCCAATTACAGCATGGTTGGATCACTGCAAACTGGATCAGAAGTGAGGGCTATGGCAGTGAGTTCAGAATTAATTTATTTGGGGTGCAAGGGAGGTGTTGTAGAAATTTGGGATAAGAAAAAACACATTAAAGTTGGCTCGTTACAGTTGGGTACAAATTGTAAGGTTAATTGCATGGCTCTAGACAGCAATGAAGAAATTTTGGTGATTGGAACTTCAGATGGCCAAATTCAGGCTTGGGAAATGAATTAA 4008 0.4276 MDTTVTVTKRAQILRHVTAFITGVIQQSQLRRQLIETLHRETPISNQVTLKQLNLAVDAVQTAISSSSSAIRSSSLSLAEKLLLPLPEYPLSFFLLSLINTLRNRSDESAIILLRIFHSNPSLARSEIAPSLYENLFYLHLFPVFRWFDEQRTRILPSVNETSSRDTGDYSASDDLVMPYAKLLSNVSGDQALKLRELEREYEEVLDENCRVLAVYFKKVLVNKDEDGTVSPPLLILKSVANEGGGLHRKEEMQMPQLENGRYNPMWSERDTSNEFLSSSSSSRSSLALLYPQRVSPRVLHPLKSSRYWTTPAYLNSALETQFSLDENSLCSSSDSEAENEEKDKDIALLEPRQSQSQNKEQMQTIFKESRGSPDYPMADYENTPPHGSGKQTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRENITCPITRQKLQNTKLPKTNYVLKRLVASWKERNPSSVPPTCESPDKDTEAVVKTEIPSASPNSVITQATVDGMIGELRCAINNLYMSEILQESEMAVLQIEKLWRGGNLGVDIHSMLSKPPIINGFVEILFNSVEPEVLQAAVFLLAEMGSRDNAIIQTLTRVDTDVECIMALFKKGLTEAVVLLYVLNPSAVTLTEMAIVESLISVFNKKEEDLVQMCLNPRTAAVLLLAQITGSSDEIIASSVVKTLFSEKAIGAIVGSLGAEWTEERIAAVEILLRCMQEDGTCRNTIADKAELSPILECFIHASDAERFKIVEFFSELIKLNRRTFNERILHIIKEEGPFSTMHTLLIHLQTALQDQCPVMAGLLLQLDLLVEPRNMSIYREDAIDTLISCLRNSDFPTTQLAAADTIMSLQGRFSFSGKPLIREVLLKRAGIDKGPRSDVQVDHMSNFFSEIEITPEEEKAADDWERKIASVLVSHEFGILFEALADGMKSRISELRSACFISATWLTYMLTILPDTGIQGAARVCLLKPFVNKLNSAKNIEHRILSMLALNSFLHFSDGLRDLTASYAKDILKGLRELKRFSPLASEMLKVLVDENEPKTDIWRHKELIQVDCRGNGEVLSIICVKDKIISGHTDGSTKVWTLKDSLLLLLQEIQEHTKAVTNLTISESGDRLYSGSLDRTAKIWSIGKAAIHCEQVHDMKDQIHNLVVTNSTTCFIPQGAGVKVQSLNGESKLLNSNKYVKCLAHAHGRLYCGCHDSSVQEIHLDTGTVSNIQSGSKKLLGRAYPIHALQVRGELIYAAGSSLDGTAIKIWNNSNYSMVGSLQTGSEVRAMAVSSELIYLGCKGGVVEIWDKKKHIKVGSLQLGTNCKVNCMALDSNEEILVIGTSDGQIQAWEMN* 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g5214 1335 Gene3D - 1040 1147 IPR015943 GO:0005515
Mal7g5214 1335 ProSiteProfiles Trp-Asp (WD) repeats profile. 1092 1125 IPR001680 GO:0005515
Mal7g5214 1335 MobiDBLite consensus disorder prediction 370 396 - -
Mal7g5214 1335 ProSiteProfiles U-box domain profile. 393 468 IPR003613 GO:0004842|GO:0016567
Mal7g5214 1335 Gene3D - 1148 1335 IPR015943 GO:0005515
Mal7g5214 1335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1301 1335 - -
Mal7g5214 1335 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 1334 - -
Mal7g5214 1335 SUPERFAMILY RING/U-box 389 468 - -
Mal7g5214 1335 Gene3D - 526 848 IPR011989 -
Mal7g5214 1335 SUPERFAMILY ARM repeat 552 1037 IPR016024 -
Mal7g5214 1335 CDD RING-Ubox_PUB 398 440 IPR045210 -
Mal7g5214 1335 SMART Ubox_2 397 461 IPR003613 GO:0004842|GO:0016567
Mal7g5214 1335 Pfam WD domain, G-beta repeat 1090 1124 IPR001680 GO:0005515
Mal7g5214 1335 SUPERFAMILY WD40 repeat-like 1065 1334 IPR036322 GO:0005515
Mal7g5214 1335 ProSiteProfiles Trp-Asp (WD) repeats profile. 1301 1335 IPR001680 GO:0005515
Mal7g5214 1335 Coils Coil 188 208 - -
Mal7g5214 1335 ProSitePatterns Trp-Asp (WD) repeats signature. 1320 1334 IPR019775 -
Mal7g5214 1335 SMART WD40_4 1043 1080 IPR001680 GO:0005515
Mal7g5214 1335 SMART WD40_4 1085 1124 IPR001680 GO:0005515
Mal7g5214 1335 SMART WD40_4 1254 1290 IPR001680 GO:0005515
Mal7g5214 1335 SMART WD40_4 1205 1251 IPR001680 GO:0005515
Mal7g5214 1335 SMART WD40_4 1293 1333 IPR001680 GO:0005515
Mal7g5214 1335 SMART WD40_4 1159 1202 IPR001680 GO:0005515
Mal7g5214 1335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1092 1125 - -
Mal7g5214 1335 Pfam U-box domain 395 465 IPR003613 GO:0004842|GO:0016567
Mal7g5214 1335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 470 IPR013083 -
Mal7g5214 1335 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 1334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g5214 Mal-Chr7 121327467 121334469 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g5214 395 481 U-box Gene Family AT5G42340 44.828 2.22e-17 85.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g5214 7 121327467 121334469 Mal7g5214 7 121327467 121334469 ECH