Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g4959 ATGGGATTTCCAGTAGGTTACACAGAACTTCTCTTCCCAAAACTCGTTCTTCATCTTCTCTCCATCTTCACTTTCATCCGAAAACTCATCAACACCATTTTTCACTACATGGGTCTCCCCGATTTCATCGAACCCGACATTCCATGGCCCGATAATTCAACCCAAATACCCGAATTCGAATCCGTTTCAGCTCTTCTCATCCGTGAAATCCTTCCCGTTGTGAAATTCATGGAGTTGGTGGACCCACCCGAAAGCTGTGCTGTGTGTCTTACAGAGTTCGAGGAAAACGATGAGATCAGACGGTTAGCGAATTGTAGACACATTTTCCATCGAGGTTGTTTGGACCGTTGGATGGGTTATGATCAGAGAACGTGTCCTTTGTGTAGAACACCATTCATACCTGATGAGTTGCAAAGTGCTTTCAATGAGAGATTATGGGCTGCTTCTGGGATCCCTGAATTTCACTCTCATGATGTTCTTTCTTAA 486 0.4424 MGFPVGYTELLFPKLVLHLLSIFTFIRKLINTIFHYMGLPDFIEPDIPWPDNSTQIPEFESVSALLIREILPVVKFMELVDPPESCAVCLTEFEENDEIRRLANCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPDELQSAFNERLWAASGIPEFHSHDVLS* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g4959 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 132 IPR013083 -
Mal7g4959 161 SMART ring_2 86 128 IPR001841 -
Mal7g4959 161 Pfam Ring finger domain 85 129 IPR001841 -
Mal7g4959 161 PANTHER BRH1 RING FINGER PROTEIN 1 156 - -
Mal7g4959 161 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
Mal7g4959 161 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 156 - -
Mal7g4959 161 SUPERFAMILY RING/U-box 71 135 - -
Mal7g4959 161 CDD RING-H2 86 129 - -
Mal7g4959 161 SMART ringv_2 85 129 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g4959 Mal-Chr7 118419851 118420336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g4959 1 150 C3H Transcription Factor Family AT1G63840 60.000 9.28e-61 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g4959 K16281 - rcu:8287413 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g4959 7 118419851 118420336 Mal7g4959 7 118419851 118420336 ECH
Mal6g0213 6 3035166 3035561 Mal7g4959 7 118419851 118420336 PCT