Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g4899 ATGTCTTTCAGCGGAACCCAACAGAAATGCAAGGCTTGTGATAAAACTGTTCACGTGGTTGAAACATTATCTGCTGATGGTAATGTTTATCACAAGAACTGCTTCAGATGTAATCAATGCAATGGCCTTCTCGCGATGAGTAACTATTCATCAATGGAAGGAGTTCTATACTGCAAGACTCACGCTGAGCAGCTTTTCAAGGATTCCTTCGCCACCAAGAAAACCCAGACTGGAAAGCCCAGTGAACTGCCTAGGGCTCCAAGCAAACTTTCTGCTTTCTTCTCAGGGACTCAAGAAAAATGTTCATCTTGCAAGAAAACCGTATATCCATTGGAAAAGTTGACAGTGGAAGGAGAGTTTTACCACAAATCATGCTTTAGGTGTACACATGGAGGATGTTTTCTCAGCCCTTCATCCTATGCTGCTCTTGATGGATTCATATACTGCAAGCCTCACTTTTCTCAGTTGTTTAAGGCAAAAGGAAGTTATAGTTATCTCTCTAAACAAGCTTCAATAAAGAAAAATGAAGAAATGCAACAAGCTGCAGGAGAGAAAACTGATGATTCAGCACCAGCATCAGACACCGAGACAAAGGAAGAACAAGATCCTGCTGTTACACAAGAGGTGTAG 630 0.4175 MSFSGTQQKCKACDKTVHVVETLSADGNVYHKNCFRCNQCNGLLAMSNYSSMEGVLYCKTHAEQLFKDSFATKKTQTGKPSELPRAPSKLSAFFSGTQEKCSSCKKTVYPLEKLTVEGEFYHKSCFRCTHGGCFLSPSSYAALDGFIYCKPHFSQLFKAKGSYSYLSKQASIKKNEEMQQAAGEKTDDSAPASDTETKEEQDPAVTQEV* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g4899 209 ProSiteProfiles LIM domain profile. 99 159 IPR001781 -
Mal7g4899 209 SMART lim_4 100 152 IPR001781 -
Mal7g4899 209 SMART lim_4 9 61 IPR001781 -
Mal7g4899 209 Pfam LIM domain 10 64 IPR001781 -
Mal7g4899 209 Pfam LIM domain 101 156 IPR001781 -
Mal7g4899 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 127 165 - -
Mal7g4899 209 PANTHER OS06G0237300 PROTEIN 1 202 IPR045268 GO:0051015
Mal7g4899 209 MobiDBLite consensus disorder prediction 174 209 - -
Mal7g4899 209 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 202 - -
Mal7g4899 209 Gene3D Cysteine Rich Protein 95 165 - -
Mal7g4899 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 69 - -
Mal7g4899 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 93 126 - -
Mal7g4899 209 MobiDBLite consensus disorder prediction 178 209 - -
Mal7g4899 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Mal7g4899 209 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Mal7g4899 209 Gene3D Cysteine Rich Protein 2 69 - -
Mal7g4899 209 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g4899 Mal-Chr7 117653202 117654396 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Mal7g4899 LIM 5.9e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g4899 - K24413 gmx:100499865 316.235