Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g4885 ATGTTTTTTTTAACACTCTTTGGTGCAGCATCTTGTCTTATGGAGTGGAATAACTTGAAAGCACCTTCATGGGATTTAACTGAAATGGATCAAGGAAACTTAAACAACATAGAAACAATGGATGGTTCAATTAGAAGGTTTGAAGATTATAGAACAAAAGGGGAATTTTCTGTTGACTTGAAGCTTGGCCATGTTGGAAATTCTAGCACTGAATCAGGTCTTACAAAGTCCAAAGATGTTGGTGGATTTACCAAAATGACATCTTCATCATCTTCAACAACTTCAGGGTCATCTAAGAGAGCTAGAGCTATTAACAATGGGACTCAGATAGTTTCATGTCTTGTGGATGGTTGTCAAGCTGATCTTAGTAACTGTAGAGACTATCATAGACGCCATAAGGTCTGTGAAATTCATTCCAAGACTGCACAAGTCACAATTGGTGGACATAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATGCTCTAGAGGAATTTGATGAAGGAAAGAGGAGCTGTAGGAAACGATTAGATGGACACAACCGACGGAGAAGAAAGCCACAACCAGAACCTATTACTCGATCTAGTAGTTTTTTGTCCAATTACCAAGGAACCCAGTTACTACCCTTCTCAAGTTCACATGTATACCCTTCTACTGCTATGATGAATCCCACTTGGGGTGGAGGAGATGTTAGGCTCCATAACCACAACCAACACCAACACATGCACCATCTGGTCGATAAACAAGACCTTTTTCTTGGAACAACATCTCCATCCAGCAGCTACAAAGAAGGTAAACAATTGTCATTCATACAAGGAACAGGAGCATCCACTGTCAACAACCAAAACCAACAACATCTTCCAGCTGGTTCCATAAGTCACACGTTTAACAGGACCAATCCTTTTTCAGAAAGATGCAAAATGTTCTGTGACAACAACAACACTTCTTGTGCTCTCTCTCTTCTGTCATCACCAGTATCACAGACACATGATCATCCTGAAAATGGATTGAATCAGATGGTGAATACTCATTCATCTTTTATGCAACCCTTAGGTTTGAGTTTGCATGACCATAGCTTGGGGTCTGTGGATTCTGTTTTGGGTTCAAATGATCAGAGTGGTCATTGTTCCTCAATGTATAACATGGGTTCTAATGAATCCCATTCTCAGGGGAATAATAATGAAGCTTCTCCATTATTTCCCTTTCAATGGGATTAG 1218 0.4015 MFFLTLFGAASCLMEWNNLKAPSWDLTEMDQGNLNNIETMDGSIRRFEDYRTKGEFSVDLKLGHVGNSSTESGLTKSKDVGGFTKMTSSSSSTTSGSSKRARAINNGTQIVSCLVDGCQADLSNCRDYHRRHKVCEIHSKTAQVTIGGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEPITRSSSFLSNYQGTQLLPFSSSHVYPSTAMMNPTWGGGDVRLHNHNQHQHMHHLVDKQDLFLGTTSPSSSYKEGKQLSFIQGTGASTVNNQNQQHLPAGSISHTFNRTNPFSERCKMFCDNNNTSCALSLLSSPVSQTHDHPENGLNQMVNTHSSFMQPLGLSLHDHSLGSVDSVLGSNDQSGHCSSMYNMGSNESHSQGNNNEASPLFPFQWD* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g4885 405 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 23 405 IPR044817 GO:0003677
Mal7g4885 405 MobiDBLite consensus disorder prediction 177 196 - -
Mal7g4885 405 MobiDBLite consensus disorder prediction 68 101 - -
Mal7g4885 405 ProSiteProfiles Zinc finger SBP-type profile. 110 187 IPR004333 GO:0003677
Mal7g4885 405 Gene3D - 104 174 IPR036893 GO:0003677|GO:0005634
Mal7g4885 405 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 23 405 - -
Mal7g4885 405 Pfam SBP domain 113 186 IPR004333 GO:0003677
Mal7g4885 405 SUPERFAMILY SBT domain 111 192 IPR036893 GO:0003677|GO:0005634
Mal7g4885 405 MobiDBLite consensus disorder prediction 377 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g4885 Mal-Chr7 117432779 117436633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g4885 14 272 SBP-box Gene Family AT5G50670 47.636 1.02e-72 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mal7g4885 SBP 2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g4885 - - cam:101507938 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g4885 7 117432779 117436633 Mal7g4885 7 117432779 117436633 ECH
Mal7g4885 7 117432779 117436633 Mal2g1339 2 16099106 16102480 PCT