Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g4841 ATGCCTTTTCAAGTCATGGATCAGAGGGGTGTTTCTGACCCCTCCAATTTTTTCGATGATATTTCATTTCCTTCTGAGAGGAACATTGGATTAAGGAAGCCAAAGTACATGAATGTCCAACACCCCCAAGGAATGAATGGAATGGTAGCACCGCCTGGCAGTACTTTGAGTGCTTCATCACCCTTTGAAGTAAACGCAAAATCTGGATTTCCGATGTCACAGACTAATCTATCTGAGGAAAGTGTAGAAAAGCTACCTTTTGGTGGAGAACAATGCATTGCTGATGTATTGAAGGGTTCAAATGGATCATTTCATTACAATCCCCAATCATGGTCTGACGTGTACAGGCAGTCAGAACCTACATCGTATCGTTTAATCGGGAACAAGGTTGTTGCAAACAATGCTCTCCCTCGCGAGAGTATTTTATTCTCGAGCTCACTGTCGGATATGTTTAGCCGTAAATTAAATATATTGAGGAATGATCTTCTGTCCGATCAGCCGACGGCTGCCAGTTCCTTTCTGGAGGAAGAACCATATAAATCTCTTGAAGAGATGGAGGCTGACTATATACATAATCTCCTTCCTGATGAAGATGATCTATTTTCTGGTGTTGCTGATGAGTTGGAATACAATTCTCATGCTAGAACTAATGATGACTCGGAAGATATTGATTTTTTTAGCAGCGGTGGAGGCATGGAGCTGGAAGGAGATGAACATTTTAGTTCACTGAGAAGAACAAGTGGTTTGGATGGGGATCATGGTTTCTTTGGAGGTTCTAAAGGAAAACTTCCTTTTGTTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAGTGTAGAGGACTTCGAGCTAAAGACTCTATTTGAGCAATACGGAGATATCCGTACCATGTATACTGCTTGCAAGCATCGCGGCTTTGTCATGATTTCTTATTTTGATCTAAGGGCAGCACAGAGAGCAATGCAAGCCCTTCAAAGCAGGCCATTGAGGTCTCGGAAACTCGATATACATTATTCGATTCCAAAGGTCAATGCTCCAGAGAAGGATATTGGTCATGGTACGCTGATGTTATCTGGTCTTGATTCATCTGTTTTAAACGATGATTTCAAACGTATTTTTGGCTTCTATGGAGAAATTAAAGAAATCTATGAATATCCAGAAATGAAGCATCTCAAATTTATAGAGTTTTATGACGTGCGAGCTGCTGAAGCTGCACTTCGGGCATTGAACAGGATCGAAATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGGTTTGCGACATGTCTGATGCAGCAGTCTCATAAGGTGCAAGATGAACGTGATATTGGTCATAGCATTATTGACAACTTACCGTTAAGACAAAAGCCAACACTGTCGTCTGGAGTAATTGATTCTGCCGGCTTGGAAAATGGATATAATCAGAGATTTCAATCTGCTATGCGGCAACAACCTTTGAATGGATTTATTGATAATGCATTATTTCATGTCAATTCTGGTGTTAACAACACTGCGAGAGGGGGATCTATTGGAAAAGTTTCTGGTGTTTCCGAGTCCAACAACCTTGTCGATGCAATGAAATTTGCATCTAGTCCAACATCATTTCATCCTCATTCTTTACCAGAGTATCATGGTAGTTTACCTAATGGTAGTCCTTATAACTTTTCAAGCACCATTAGCAACAAGGCTGGTAATATAGGTGCTGGAGTGACAGAAGCCTCTAATGGAAGGCATATTCAAGGAATAAGCTCAGTTGGGAACTTAGCAGAATTCAACGGAGGAGGGTCATCAGGAAATGGGATCCACGCACATCATGGACTTAATCATATGTGGAGTGGCTCCAATTTGCATCAGCAATCTTCACCAAGTAACATGCTTTGGCCGAAAACGCCATCATTTGTTAATGGTTCTCCAGGTCTGTCTCAGATGTCAGGCTTTGCTAGAACACCGCCTCACATGCTGAGAACACAGCAATTGGACCATCATGTTGGATCGGCACCGGTTGTTACAGCCTCCCCCTGGGAAAGGAAAAACTCATACTTGGGAGAGTCTCCTGAGACTTCTGCTTTTCACTTGGGTTCTCCTGGAAATGGAGGTTTCCATGGTTCTTGGCAAATGCGTCCAATGGAATTTTCTGCTCATAATAACATGTTTTCTCATGCTGGGGGGAATGGCACTGAACTCTCGTCCAGTGCTGGACAGAGCTCGCCTAATCCGTTGTCACATATTCTCTATGGTAGACATCCAACGACTGCAACATCTAAATTTGATCCTACCAATGAACGAACGAGAAACCTTTACAGCCGTAAAAGTGAAGCAAACACCACCAGCAATGCAGATAAAAAACTTTATGAACTTGACCTGGGACGCATATTGCGTGGAGAAGACATCCGAACAACGCTCATGATAAAAAACATTCCCAACAAGTATACTTCAAAGATGCTACTTGTTGCCATAGATGAGCAATGTCGGGGAACGTATGATTTTCTGTATCTACCAATAGACTTCAAAAACAAATGTAATGTTGGATATGCATTCATAAATATGACTGATCCTACTCAAATTATTCCTTTCCACCAGGCTTTCCATGGTAAGAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCATCACTTGCATATGCCCGGATTCAAGGAAGAGCTTCTCTTGTTGCACATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCAAACAGAAGGCCCAAATGCCGGTGATATGGAACCTTTCCCCATTGGAGCCAATGTTAGAGTGAGACCTGGAAAATCTCGCAATGCTGGCAACGAGGAAAATCGCATCCAAGCCCCTCCTTCAACTGTAGCAAGCGGAGAAGAGTCTGCAAATGGAAACTCCGACTGA 2913 0.4233 MPFQVMDQRGVSDPSNFFDDISFPSERNIGLRKPKYMNVQHPQGMNGMVAPPGSTLSASSPFEVNAKSGFPMSQTNLSEESVEKLPFGGEQCIADVLKGSNGSFHYNPQSWSDVYRQSEPTSYRLIGNKVVANNALPRESILFSSSLSDMFSRKLNILRNDLLSDQPTAASSFLEEEPYKSLEEMEADYIHNLLPDEDDLFSGVADELEYNSHARTNDDSEDIDFFSSGGGMELEGDEHFSSLRRTSGLDGDHGFFGGSKGKLPFVEQPSRTLFVRNINSSVEDFELKTLFEQYGDIRTMYTACKHRGFVMISYFDLRAAQRAMQALQSRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDDFKRIFGFYGEIKEIYEYPEMKHLKFIEFYDVRAAEAALRALNRIEIAGKQIKLEPGHPRFATCLMQQSHKVQDERDIGHSIIDNLPLRQKPTLSSGVIDSAGLENGYNQRFQSAMRQQPLNGFIDNALFHVNSGVNNTARGGSIGKVSGVSESNNLVDAMKFASSPTSFHPHSLPEYHGSLPNGSPYNFSSTISNKAGNIGAGVTEASNGRHIQGISSVGNLAEFNGGGSSGNGIHAHHGLNHMWSGSNLHQQSSPSNMLWPKTPSFVNGSPGLSQMSGFARTPPHMLRTQQLDHHVGSAPVVTASPWERKNSYLGESPETSAFHLGSPGNGGFHGSWQMRPMEFSAHNNMFSHAGGNGTELSSSAGQSSPNPLSHILYGRHPTTATSKFDPTNERTRNLYSRKSEANTTSNADKKLYELDLGRILRGEDIRTTLMIKNIPNKYTSKMLLVAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPTQIIPFHQAFHGKKWEKFNSEKVASLAYARIQGRASLVAHFQNSSLMNEDKRCRPILFQTEGPNAGDMEPFPIGANVRVRPGKSRNAGNEENRIQAPPSTVASGEESANGNSD* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g4841 970 SMART rrm1_1 357 425 IPR000504 GO:0003723
Mal7g4841 970 SMART rrm1_1 805 881 IPR000504 GO:0003723
Mal7g4841 970 SMART rrm1_1 272 340 IPR000504 GO:0003723
Mal7g4841 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 337 IPR000504 GO:0003723
Mal7g4841 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 358 423 IPR000504 GO:0003723
Mal7g4841 970 Gene3D - 265 353 IPR012677 -
Mal7g4841 970 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 967 - -
Mal7g4841 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 356 429 IPR000504 GO:0003723
Mal7g4841 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 344 IPR000504 GO:0003723
Mal7g4841 970 MobiDBLite consensus disorder prediction 720 746 - -
Mal7g4841 970 MobiDBLite consensus disorder prediction 945 970 - -
Mal7g4841 970 CDD RRM1_MEI2_like 270 345 IPR034453 -
Mal7g4841 970 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 967 - -
Mal7g4841 970 SUPERFAMILY RNA-binding domain, RBD 805 889 IPR035979 GO:0003676
Mal7g4841 970 MobiDBLite consensus disorder prediction 921 970 - -
Mal7g4841 970 SUPERFAMILY RNA-binding domain, RBD 268 427 IPR035979 GO:0003676
Mal7g4841 970 Gene3D - 354 449 IPR012677 -
Mal7g4841 970 MobiDBLite consensus disorder prediction 720 779 - -
Mal7g4841 970 CDD RRM3_MEI2_like 806 891 IPR034454 -
Mal7g4841 970 Pfam RNA recognition motif 2 803 899 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g4841 Mal-Chr7 116873497 116879712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g4841 269 422 Eukaryotic Initiation Factors Gene Family AT1G71770 25.767 4.86e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g4841 7 116873497 116879712 Mal2g1377 2 16556570 16562980 ECH
Mal7g4841 7 116873497 116879712 Mal7g4841 7 116873497 116879712 ECH
Mal7g4841 7 116873497 116879712 Mal2g1377 2 16556570 16562980 PCT