Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g4719 ATGGTAAGAGACGATTTATGCATCACCGTTCCGAGTTTATTCCGGTGTCCTATTTCCCTCGACGTGATGAAATCTCCGGTGAGTCTCTGCACCGGAGTTACCTACGACCGTTCCAGTATCCAACGCTGGCTCGATAACGGCAACAACACTTGTCCCGCTACTATGCAAATTCTTCAAACCAAGGATTTCGTTCCGAATCGGACGTTGCAGAGACTCATCCAGATCTGGTCCGATTCGGTTCGCCACCGAGTCGACTCGTCGGAATCTCCGTTATCTACCGATACGGTTGATAAACGTGATCAATTACTTGTTGCTATCACTGATTTAGAGTCCGGTAGTGAGAATCGGTTCGAGTCGCTTGTGAAAGTCGTACAGTTCGCGAAAGATTCTGAAGAGAATTGTGTTTTTCTGGCTAAAACGGAAGGATTCGTGGCGTTGTTGGTAGGTTTTCTTGATAATGTTGATGGTGGAGTTGAACGGAGTGTGGAATTGCTTGAACAGGTTGTTATTGCGTTGGATTTGGTTCTAAATAAAATTGAGAATCGTGACTCGATTTTGAAAAGCAAGAACGAGAAGGAGTTACGGAGTATGAATTCTTTGCTTCTTGTTTTACAACAAGGAAGCATTGAATCGAAGGTTGCATCGGTTAGGGTTTTGAAATTCATCGCGGTAGACACGGAATCGAAGCTTCTGATAGCGGAGAAGGAAGGTTTAATATCTGAATTACTCAATCTAATCACGCCGGAGAAAGATCAGAGTCTAATCGAGAACGCGCTTTCGTGTTTGGTAGCAATCTCAACACCGAAGCGAAACAAAGCGAAGCTAGTTCATCTCGGAGCAGTGAAGGTGTTCTCAAACCTTCTAACGGCGTCACCGAGTTTATGTGTTTCGGTGACGGAGAAAGTGTTGAAACTTCTAGAAACGGTGTCCTCGACGAAGGAAGGTAGGTCGGAGATATGCGAAGAACCATCGTGCGTGGCGGCAATAGTGAACAAGGTATTGAAAGTGTCCACCGTGGCGACGGAGCATGCGGTTACGATACTGTGGAGTGTTTGTTACTTGTTTCGTGATCAGAAAGCACAAGAAGCTGTTACGAAGGCGAATGGATTAACGAAGATTTTGCTTCTGATGCAGAGTAATTGCACGCCACAAGTTCGTCAAATGTCCGTAGATTTGCTTAAGATTTTTCGTGTTAATTCTAAGTCATGTCTTTCTTCGTATGATACGAAAACTACTCATATTATGCCATTTTGA 1254 0.4434 MVRDDLCITVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQILQTKDFVPNRTLQRLIQIWSDSVRHRVDSSESPLSTDTVDKRDQLLVAITDLESGSENRFESLVKVVQFAKDSEENCVFLAKTEGFVALLVGFLDNVDGGVERSVELLEQVVIALDLVLNKIENRDSILKSKNEKELRSMNSLLLVLQQGSIESKVASVRVLKFIAVDTESKLLIAEKEGLISELLNLITPEKDQSLIENALSCLVAISTPKRNKAKLVHLGAVKVFSNLLTASPSLCVSVTEKVLKLLETVSSTKEGRSEICEEPSCVAAIVNKVLKVSTVATEHAVTILWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCTPQVRQMSVDLLKIFRVNSKSCLSSYDTKTTHIMPF* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g4719 417 SUPERFAMILY RING/U-box 6 78 - -
Mal7g4719 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 90 IPR013083 -
Mal7g4719 417 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Mal7g4719 417 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Mal7g4719 417 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Mal7g4719 417 Gene3D - 91 407 IPR011989 -
Mal7g4719 417 CDD RING-Ubox_PUB 14 56 IPR045210 -
Mal7g4719 417 SUPERFAMILY ARM repeat 111 399 IPR016024 -
Mal7g4719 417 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 417 - -
Mal7g4719 417 PANTHER WDSAM1 PROTEIN 4 417 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g4719 Mal-Chr7 115433575 115434828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g4719 1 417 U-box Gene Family AT5G64660 55.035 1.86e-149 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g4719 - - cam:101496984 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g4719 7 115433575 115434828 Mal7g4719 7 115433575 115434828 ECH
Mal2g1532 2 18389673 18390923 Mal7g4719 7 115433575 115434828 ECH
Mal7g4719 7 115433575 115434828 Mal2g1532 2 18389673 18390923 PCT