Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g4689 ATGGACTTCGACGAGTATGAGTACTTGGAGAAGACGGTGGAGGAGCAACCCGAAGACAAAGATTCCTCCAAAAACAAGAAGAGTGACAGCGCCGATATTAAATCCGATAGGACTTACCGCAAGCACGGCGTCGACGACGATCTAGACGGCGGCGAAGATAGGCGGAGCAAAAGGTCTCGCGGCGGCGACGACGAGAATGGCTCTAAAAGGGATCGCGATAGAGACCGTGAACGATCTTCCGGTCGTCACAGGGAGAGGGAGAGAGACGGAGAGAGAGGTAGCAGAGAGAAAGAGAGGGAGAGAGAGAGAGGTAGTAGAGAGAAAGAGAGGGAGAGAGACGGAGAGAAAGGTGCGAGAGATAAGGAGAGGGAAAGGGAGAGAGAAAAGGAGAGGGAGAGGAGAGATAAGGAAAGGGAAAAGGAACGGGAGAGAAGAGATAGGGAGAGAGAAAAGGAACGAGCAGAGAGGGAAAAAGAGGAGAAAGAGAGACCAAGGAGGAGTATGAGTCGTCCTGAGAGAGACAGAGCAGGAGACAGAGGAGAGCGGGATTTCGAAAATAGGGATGGCAGGAGATTCAGGGATAAGAAAGATAATGTGGAACCTGAGGCAGACCCAGAAAGAGACCAGAGGACTGTTTTTGCCTACCAGATGCCTTTGAAAGCAACTGAGAGAGATGTATACGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTACTTCTCGGGCAACCGGTAATGGTGAAACCTTCTGAGGCTGAAAAAAATCTTGTTCAATCTAATCCTTCCAGTGGAGCTGCTGTAGTAGGACCATATGGAGCAGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACCGAGGCTAATCTGCGAGAGATTTTTGAGCCATTTGGTCAGATTGAGGTTGTACAACTTCCTCTTGACATGGAGACGGGGCATTGCAAGGGTTTTGGGTTTGTTCAATTTGCCCATCTTGAACATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATAAAGGTTTCATCTGTTACAGATCATGTTGGAAGTCAAGATACAACTGCAAAGTCTGCAGACTTTGATGATGATGAAGGTGGATTGACTTTAAATGCCCACTCAAGAGCATTGCTTATGCAAAGATTGGCTGGTGCTGATATTCCCACAATTGTGAATGGGTCGGTTCCTGGTCAGCCGGCTTTTAGCGTGCCTGGTAATCCAGGTGTTATACCTGCACAAGTTCTACCAACACAAGTTATGCCTACCCCTGTGGCAGAACCAGTAGGAATCCCCAGCGAGTGTTTATTATTGAAGAACATGTTTGATCCAAGCACCGAGACGGAACCAGATTTTGACATAGACATTAAAGAGGATGTAGAGGAAGAGTGTTCTAAATACGGCCGGGTGAAGCATATTTATGTCGACAAAAGAAGTGCAGGTTTTGTGTACTTGCAGTTTGAAACAGTGGAAGCATCAAGTGCTGCACAACGGGCAATGCACATGAGATGGTTTGCACGCAGGTTGATTACAGCAATCTTCATGGAACCACATTTATATGAAGCCAAGTTTAGGGGGGAATCTTGA 1710 0.4696 MDFDEYEYLEKTVEEQPEDKDSSKNKKSDSADIKSDRTYRKHGVDDDLDGGEDRRSKRSRGGDDENGSKRDRDRDRERSSGRHRERERDGERGSREKERERERGSREKERERDGEKGARDKEREREREKERERRDKEREKERERRDREREKERAEREKEEKERPRRSMSRPERDRAGDRGERDFENRDGRRFRDKKDNVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNPSSGAAVVGPYGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLTLNAHSRALLMQRLAGADIPTIVNGSVPGQPAFSVPGNPGVIPAQVLPTQVMPTPVAEPVGIPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEASSAAQRAMHMRWFARRLITAIFMEPHLYEAKFRGES* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g4689 569 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 569 - -
Mal7g4689 569 MobiDBLite consensus disorder prediction 13 209 - -
Mal7g4689 569 Gene3D - 470 568 IPR012677 -
Mal7g4689 569 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 389 IPR000504 GO:0003723
Mal7g4689 569 CDD RRM3_RBM39_like 474 556 - -
Mal7g4689 569 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 404 493 IPR029123 -
Mal7g4689 569 Gene3D - 203 295 IPR012677 -
Mal7g4689 569 MobiDBLite consensus disorder prediction 1 210 - -
Mal7g4689 569 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 279 IPR000504 GO:0003723
Mal7g4689 569 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 498 551 IPR000504 GO:0003723
Mal7g4689 569 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 383 IPR000504 GO:0003723
Mal7g4689 569 PANTHER CC1-LIKE SPLICING FACTOR 1 569 - -
Mal7g4689 569 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Mal7g4689 569 SMART rrm1_1 476 553 IPR000504 GO:0003723
Mal7g4689 569 SMART rrm1_1 211 283 IPR000504 GO:0003723
Mal7g4689 569 SMART rrm1_1 312 385 IPR000504 GO:0003723
Mal7g4689 569 Gene3D - 307 403 IPR012677 -
Mal7g4689 569 Coils Coil 118 164 - -
Mal7g4689 569 TIGRFAM SF-CC1: splicing factor, CC1-like family 94 565 IPR006509 GO:0003723|GO:0005634|GO:0006397
Mal7g4689 569 SUPERFAMILY RNA-binding domain, RBD 311 556 IPR035979 GO:0003676
Mal7g4689 569 CDD RRM1_RBM39_like 211 283 - -
Mal7g4689 569 SUPERFAMILY RNA-binding domain, RBD 202 295 IPR035979 GO:0003676
Mal7g4689 569 CDD RRM2_RBM23_RBM39 313 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g4689 Mal-Chr7 115044922 115051576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g4689 284 384 Eukaryotic Initiation Factors Gene Family AT4G34110 30.392 3.94e-07 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g4689 7 115044922 115051576 Mal2g1568 2 18848936 18856293 ECH
Mal7g4689 7 115044922 115051576 Mal7g4689 7 115044922 115051576 ECH
Mal7g4689 7 115044922 115051576 Mal2g1568 2 18848936 18856293 PCT