Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g4575 ATGATTGAAGTTACAGGGGAGTTGCTGGAATCAGATTCATCTCAGTGTGATGTGTGTAAAGACACATTTGCCCTTGGCGAAAAGGCGAAGCAGATGTTGTGTAAGCATATATATCATGATGAATGTATCTTGCCATGGTTGGAAATGCATAATTCTTGTCCTGTTTGTCGTTTTGAGTTGCCTACAAATGATCCTAATTATGAACAGCAGGTTGGTGGTGGTGGCGGTGGAGGAGCAGCTGGTGGTGGTGGTTATGGTGGTGGAGGTTCTGATGATTCAGCGAGGACAAGGTTTAGGGTTTCTTTGTTGTTTATGCCGTTTCGGCCTTCTGGTGTTGCTGCAGGGACAAGCAATGTGAATAACAATGATAGCAATAATGGAAATGGTAGTGGACAACCCAATGCTGAGAATAGGGGGAATCAAAATTTTGAGTCATAG 438 0.4361 MIEVTGELLESDSSQCDVCKDTFALGEKAKQMLCKHIYHDECILPWLEMHNSCPVCRFELPTNDPNYEQQVGGGGGGGAAGGGGYGGGGSDDSARTRFRVSLLFMPFRPSGVAAGTSNVNNNDSNNGNGSGQPNAENRGNQNFES* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g4575 145 SUPERFAMILY RING/U-box 8 64 - -
Mal7g4575 145 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 93 - -
Mal7g4575 145 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 2 93 - -
Mal7g4575 145 SMART ring_2 16 56 IPR001841 -
Mal7g4575 145 MobiDBLite consensus disorder prediction 67 92 - -
Mal7g4575 145 ProSiteProfiles Zinc finger RING-type profile. 16 57 IPR001841 -
Mal7g4575 145 CDD RING-H2_RNF126_like 15 57 - -
Mal7g4575 145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 73 IPR013083 -
Mal7g4575 145 Pfam Ring finger domain 15 57 IPR001841 -
Mal7g4575 145 MobiDBLite consensus disorder prediction 113 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g4575 Mal-Chr7 113799342 113799779 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g4575 2 70 C3H Transcription Factor Family AT5G15820 53.623 1.44e-22 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g4575 - K11982 mtr:MTR_6g079660 199.519