Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g4562 ATGCAAGATCACACTGAATTTACACATCAACCAAATACAAATATTCCCCTTCAAAACCTCTCCGAACTAAGCACTAAAATGGATTCTATTCAAAGCTTCATATCCCAATCCATTCAAACAAACACACTCCTCCCCAAACAACACTTAGACTCACTCTCCAACCAAATCTCCTCCACAATTCGTCAAGTCATCATCAACGCAACTGCACTTCTCGCCACTTGTCCAGAAACAATAACAGTCCCTCCAACTGAGTGTTACTGGACACATGGTAAAAATGTCTATTGCTTTGATGATAACGTGGCGAATTGCACGATTAAAGAACATTTTGGAATCGTGGAACTCGACGCGGTGGAACTGCTTGCGAAGCACTTCCACTTCTGCGAAATTTGCGGGAAAGGTTTCACGCGCGACGCGAATTTGCGAATGCACATGCGCGCCCACGGGGAACAGTTCAAGACTCACGAAGCATTGCGTTGTGTGAGGGAAACACAAACGCGCTTAACGGCGACACGATTTTCTTGTCCTTATGAAGGTTGCAAAAGGAACAGATTACACAAGAAGTTCAATCCGTTGAAATCAGTGTTGTGTTTGAGGAACCATTTCAAGAGAACTCATTGTCCGAAAACTTACACATGCGATCGGTGTCGGAGGAAGACTTTTGCGGTGGTTTCGGATTTGAAGAGTCACGTGAAACAGTGTAGGGGAGAGTCTACATGGAAGTGTTCGTGCGGAACCACATTTTCTAGGAAGGAGAAATTGTTTGGACACGTGGTGCGGTTTGAAGGGCACTCGCCGGCGGTTGTTGAGGTGGGTGAAGAAGAGAAAGGAATATCAATGACGGCGGCGTCGAAGGAAGGGGAAGGTGTGGGTGGATTGTTGACGAAAGAAAATGATTGTTTGGATGGGTTACCTGAAGGTTTCTTCGATGATTTGGAAAATTTTTGGGTTTGA 951 0.4522 MQDHTEFTHQPNTNIPLQNLSELSTKMDSIQSFISQSIQTNTLLPKQHLDSLSNQISSTIRQVIINATALLATCPETITVPPTECYWTHGKNVYCFDDNVANCTIKEHFGIVELDAVELLAKHFHFCEICGKGFTRDANLRMHMRAHGEQFKTHEALRCVRETQTRLTATRFSCPYEGCKRNRLHKKFNPLKSVLCLRNHFKRTHCPKTYTCDRCRRKTFAVVSDLKSHVKQCRGESTWKCSCGTTFSRKEKLFGHVVRFEGHSPAVVEVGEEEKGISMTAASKEGEGVGGLLTKENDCLDGLPEGFFDDLENFWV* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g4562 316 SMART c2h2final6 210 231 IPR013087 -
Mal7g4562 316 SMART c2h2final6 172 205 IPR013087 -
Mal7g4562 316 SMART c2h2final6 125 147 IPR013087 -
Mal7g4562 316 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 8 84 IPR044300 GO:0010044|GO:0010447
Mal7g4562 316 ProSitePatterns Zinc finger C2H2 type domain signature. 127 147 IPR013087 -
Mal7g4562 316 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 106 312 IPR044300 GO:0010044|GO:0010447
Mal7g4562 316 Pfam Zinc-finger of C2H2 type 126 145 - -
Mal7g4562 316 Gene3D Classic Zinc Finger 206 262 - -
Mal7g4562 316 SUPERFAMILY beta-beta-alpha zinc fingers 123 147 IPR036236 -
Mal7g4562 316 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 8 84 - -
Mal7g4562 316 Gene3D Classic Zinc Finger 126 149 - -
Mal7g4562 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 152 IPR013087 -
Mal7g4562 316 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 106 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g4562 Mal-Chr7 113657633 113658583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g4562 109 291 C2H2 Transcription Factor Family AT1G34370 53.191 1.19e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal7g4562 zf-met 0.0012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g4562 - - pvu:PHAVU_002G256900g 343.969