Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g4542 ATGGATGAGGAAGAGCATGAGGTTTACGGAGGAGAAATCCCAGACGTGGCGGAGATGGAAGGAGACGTCGACATGTCCGCCGCCGACGATGAAGCCGGTGGTATAAAGGAGCTCGACGAGATGAGGCGCCGCTTGAAGGAAATGGAAGATGAAGCCGCCGCTCTTCGCGAAATGCATGCTAAGGTCGAGAAGGAAATTGGCTCCGTTCAAGATCCTGCTGCTGTAGCTGCTTCTCAGGAAAACAAGGAGGAGGCGGATGCTCGGTCTGTTTTTGTCGGCAATGTTGATTATGCATGCACACCAGAGGAAGTGCAGCAACACTTTCAGTCATGTGGGACAGTGAACAGGGTTACTATCCTGACAGACAAGTTTGGTCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAACTGAAGCTGTTCAGGAGGCTCTCCTGTTAACTGAATCTGAATTGCATGGCCGTCAATTGAAAGTTCTGCCTAAGAGGACCAATGTTCCTGGAATGAAACAATATCGTCCTAGGCGATTCAATCCTTACATGGCATATGGCTTCAGGAGGCCTTATGCTCCTCCTTACATGTACTCCCCTTATGGATATGGGAAGGCTCCAAGGTTTAGAAGGCCAAATCGTTACATGCCATACTATTAG 651 0.4869 MDEEEHEVYGGEIPDVAEMEGDVDMSAADDEAGGIKELDEMRRRLKEMEDEAAALREMHAKVEKEIGSVQDPAAVAASQENKEEADARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVETEAVQEALLLTESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMAYGFRRPYAPPYMYSPYGYGKAPRFRRPNRYMPYY* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g4542 216 SUPERFAMILY RNA-binding domain, RBD 77 184 IPR035979 GO:0003676
Mal7g4542 216 CDD RRM_II_PABPs 89 160 - -
Mal7g4542 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Mal7g4542 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 164 IPR000504 GO:0003723
Mal7g4542 216 PANTHER - 1 214 - -
Mal7g4542 216 MobiDBLite consensus disorder prediction 1 20 - -
Mal7g4542 216 Coils Coil 31 65 - -
Mal7g4542 216 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 214 - -
Mal7g4542 216 SMART rrm1_1 89 160 IPR000504 GO:0003723
Mal7g4542 216 Gene3D - 13 171 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g4542 Mal-Chr7 113416117 113421516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g4542 79 159 Eukaryotic Initiation Factors Gene Family AT2G36660 34.146 5.02e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g4542 K14396 - gmx:100789721 401.364