Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g4484 ATGCAGAGCCAACTTGTGTGTAATGGTTGTAGGAGCATGTTGCTTTACCCTAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCACCTGGGATGGATATGTCTCAACTTTATTGTGGAGGCTGTAGGACATTGCTAATGTACACACGTGGAGCTACAAGTGTCAGATGTTCTTGCTGTCACACTGTAAACCTTGCTCCAGTATCTAATCAAGTCGCCCATGTCCCTTGCGGGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCTTCAGTCAAATGTGCTGTTTGTCACTATATTACTAATATCAATATGTCCAATGGTAGGCTTCCAATTCCTGGTCATAGACCTCATGGGGCAACCGACTCGGGAACGTTACCTTCTACTTCAACATCAATGCCCCAATCTCAGAGCCAAACAGTGGTGGTAGAAAATCCAATGTCTGTAGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGCGTTACAACAGATAAGAAATAA 531 0.4444 MQSQLVCNGCRSMLLYPRGATNVCCALCNTITSVPPPGMDMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPVSNQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYITNINMSNGRLPIPGHRPHGATDSGTLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g4484 176 MobiDBLite consensus disorder prediction 118 145 - -
Mal7g4484 176 PANTHER PROTEIN LSD1 1 174 IPR040319 -
Mal7g4484 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Mal7g4484 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Mal7g4484 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Mal7g4484 176 MobiDBLite consensus disorder prediction 130 145 - -
Mal7g4484 176 PANTHER LSD1-LIKE PROTEIN 1 174 - -
Mal7g4484 176 Pfam LSD1 zinc finger 84 108 IPR005735 -
Mal7g4484 176 Pfam LSD1 zinc finger 46 70 IPR005735 -
Mal7g4484 176 Pfam LSD1 zinc finger 7 31 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g4484 Mal-Chr7 112800882 112806303 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Mal7g4484 zf-LSD1 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g4484 - - mtr:MTR_8g089310 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g4484 7 112800882 112806303 Mal7g4484 7 112800882 112806303 ECH