Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g4400 ATGGGAATTCATGGTCTGTTACCGCTACTCAAATCAATAATGCTTCCAATTCACATCAAAGATCTTCACGGCTGTTCTGTCGCCATCGACACCTATTCTTGGCTTCACAAAGGTGCCCTTTCTTGCAGCACTGACCTCTGCAAAGGCATACCCACTTTTAGGCACATTGAGTATTGTATGCATAGAGTGAATTTGCTGCGTCATTACGGTGTTAAGCCTATTCTTGTATTTGATGGAGGGCTTTTACCAATGAAGAGTGATCAAGAGAATAAGCGTGCTAGGGCTAGAAAGGATAATTTGGAACGTGCGGTTGAGCATGATTCAAATGGAAATTCTGCAGCTGCTTATGAGTGCTACCAGAAAGCCGTTGATATTTCACCGACGATTGCACGAGAACTAATTCAGGTATTGAAGCAGGAGAATGTGCAGTATATTGTTGCTCCATACGAGGCAGATGCGCAGATGACATTTTTGGCTGTTAGTAAGCTGGTTGATGCTGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAATTTCAGTATTCCATGCTACAAAAGAATAAGGAGCTTAATTTTGAAGGGTTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCAGTCCTTGCCAGGTATGGGTCTCAAAAAGGCTCATGCAAGCATTAAAAGATTTAAAAGTTATGACAAGGTTATTAAGCACTTGAAATACAATGGTGTTTCTGTACCTCCCTTTTATGAAGAGTCATTCAGGAAGGCTATACTTACTTTCCAATATCAACGTGTTTATGATCCAGTTAGTGAAAATATTGTACATTTGGCTAATATTTCTGAAGATATTGATGACGAGTTGGACTTTTTAGGCCCATATCCTTTAAAGATTTTGTTACCATTTTATATTGAATATTGA 972 0.3868 MGIHGLLPLLKSIMLPIHIKDLHGCSVAIDTYSWLHKGALSCSTDLCKGIPTFRHIEYCMHRVNLLRHYGVKPILVFDGGLLPMKSDQENKRARARKDNLERAVEHDSNGNSAAAYECYQKAVDISPTIARELIQVLKQENVQYIVAPYEADAQMTFLAVSKLVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLQKNKELNFEGFNRQMLLEMCILSGCDYLQSLPGMGLKKAHASIKRFKSYDKVIKHLKYNGVSVPPFYEESFRKAILTFQYQRVYDPVSENIVHLANISEDIDDELDFLGPYPLKILLPFYIEY* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g4400 323 PANTHER EXONUCLEASE 1 1 308 IPR032641 GO:0006281|GO:0035312
Mal7g4400 323 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Mal7g4400 323 SMART xpgineu 138 213 IPR006086 GO:0004518
Mal7g4400 323 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Mal7g4400 323 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Mal7g4400 323 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 308 IPR006084 -
Mal7g4400 323 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Mal7g4400 323 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Mal7g4400 323 Gene3D - 209 281 - -
Mal7g4400 323 SMART xpgn3 1 99 IPR006085 GO:0004518
Mal7g4400 323 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Mal7g4400 323 Gene3D - 1 207 - -
Mal7g4400 323 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Mal7g4400 323 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Mal7g4400 323 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Mal7g4400 323 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Mal7g4400 323 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Mal7g4400 323 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Mal7g4400 323 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 308 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g4400 Mal-Chr7 111532938 111534673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g4400 1 267 Core DNA Replication Machinery Family AT5G26680 25.442 2.27e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g4400 K10746 - gmx:100798062 574.318