LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal7g4258	ATGGATGCTGCGCCGCATTTATCATCGGCGGCCGCCGGAAGTGGAGGAGGTCCGGCGCCGTTTCTTCAGAAGACATATGACATGGTTGATGATTCAACAACGGACGAGATCGTCTCATGGAGCTCCACCAACAACAGCTTCGTCGTTTGGAACCCTCCTGAATTCGCTCGCCTTCTCCTTCCAACCTATTTCAAGCACAACAATTTCTCCAGCTTCATCCGTCAGCTCAATACCTATGGATTTCGAAAAATAGATTCTGAGCGTTGGGAGTTTGCCAATGAAGAATTTATAAAAGATCAAAAACATCTTCTGAAGAATATACACCGCAGGAAACCTATCCACAGTCATAGTCATCCTCCGGCATCTGCTGTAGATCCAGAAAGGGCTGCCTTAGAGGAAGAAATAGAGAAGCTTTCTCGCGAGAAAAATTCTCTTCAATCCAATCTCTTAAGCTACAAACATCATCAATCAACAGCAAAGCTTCAGTTGGAAGATTTTCAGCTGCGATTGGATGGCATGGAGAAGAGGCAGACAAGTTTGCTGAACTTCTTTGAGAAGTCTCTTCAGAATCCTTTTTTTGTTGAACATCTCTCCCGCAAAATCGAATCCATGGATTTGGCGGCTTATAATAAGAAAAGGCGGCTGCCTCAGGTTGATCATGTGCAGCCTGTTGCTGAAGGTAGCTTGGTTGACAATCATAGTAATTTCAGACAGGAATTCGGAAATGTTTTCCATCAAGATTTCTCAAAACTCAGACTAGAATTGTCACCAACTGTCTCAGACATGAACTTGATATCAGGTAGCACACAGGGTTCAAATGAAGATGAGGAAAGCCTGCAGAAAAATTTGTCTGAAGGAGAACTGACAGGAATGCAGACAACAACTGGCCTTGCTTTTGCACCTGAAACACTAGAGCTTGCAGATACTGGTGCATCTTTTACTTTTAACATGGATTCATGTTTATCACAAAGAGCAACAACTACTGAGTGCCCAAATCTTCACTCTCTGGAACCAAGTACTGAAGAAGGTGATAGTCATATATCCTGCCAACTAAATTTAACTCTGGCATCTTGTACGTTGGAATTCAACAAAAATTCATACTCGGCTAGGTCGCCCCAGATAGACTGTCAGGAAATTGGCAATTTGGCAGAATCAAGAGTTAACGCTGATGGTAAAGAATATGAAATTGGAGTTTCCTCAAACCAAAATGTAGCTAATGAGGCTATCAATTTAGCTCCACCAAAGGAGGCTTCAGGTAATGTCCAAGTCAAAGCAGCTGCTCCACACAGAGTGAATGATGTGTTTTGGGAACGTTTCCTTACTGAAAGACCAGGCTGTTCAGACAATGAAGAGGCAATATCCAACTATCGAGGAAATCCATATAATGAGCAAGAAGAAGGGCAGTCAGTTCATCAAATCTCCAGTAACATAACAAATATGGATAATCTCACACTTTGA	1458	0.4252	MDAAPHLSSAAAGSGGGPAPFLQKTYDMVDDSTTDEIVSWSSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDSERWEFANEEFIKDQKHLLKNIHRRKPIHSHSHPPASAVDPERAALEEEIEKLSREKNSLQSNLLSYKHHQSTAKLQLEDFQLRLDGMEKRQTSLLNFFEKSLQNPFFVEHLSRKIESMDLAAYNKKRRLPQVDHVQPVAEGSLVDNHSNFRQEFGNVFHQDFSKLRLELSPTVSDMNLISGSTQGSNEDEESLQKNLSEGELTGMQTTTGLAFAPETLELADTGASFTFNMDSCLSQRATTTECPNLHSLEPSTEEGDSHISCQLNLTLASCTLEFNKNSYSARSPQIDCQEIGNLAESRVNADGKEYEIGVSSNQNVANEAINLAPPKEASGNVQVKAAAPHRVNDVFWERFLTERPGCSDNEEAISNYRGNPYNEQEEGQSVHQISSNITNMDNLTL*	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal7g4258	485	SUPERFAMILY	"Winged helix" DNA-binding domain	17	110	IPR036390	-
	Mal7g4258	485	MobiDBLite	consensus disorder prediction	449	485	-	-
	Mal7g4258	485	Pfam	HSF-type DNA-binding	21	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mal7g4258	485	MobiDBLite	consensus disorder prediction	452	485	-	-
	Mal7g4258	485	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	13	480	IPR027725	-
	Mal7g4258	485	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-5	13	480	-	-
	Mal7g4258	485	SMART	hsfneu3	17	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mal7g4258	485	ProSitePatterns	HSF-type DNA-binding domain signature.	60	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mal7g4258	485	PRINTS	Heat shock factor (HSF) domain signature	72	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mal7g4258	485	PRINTS	Heat shock factor (HSF) domain signature	21	44	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mal7g4258	485	PRINTS	Heat shock factor (HSF) domain signature	59	71	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mal7g4258	485	Coils	Coil	128	155	-	-
	Mal7g4258	485	Gene3D	-	16	111	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal7g4258	Mal-Chr7	109455814	109460525	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal7g4258	21	485	HSF	AT4G13980	53.617	2.34e-158	456

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Mal7g4258		HSF_DNA-bind	1.4e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal7g4258	K09419		-	gmx:100786408	743.421