Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g4215 ATGATTAATCACTATGAAGCTTATGATCCATGTTCTACTTCTTCAAATGTTAGCAAACAATGGAAGAGAATGAAAGAGATGAAAATGGGAAGAGGAAGAGTTGAGTTGAAGAGAATTGAGAACAAAATCAACAGACAAGTTACCTTCGCTAAACGAAGGAACGGGCTTTTGAAAAAAGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCAATAGAGGAAAATTGTACGAGTTTTGTAGCAGTTCAAGCATGCTGAAAACTCTAGAGAGGTACCAGAAATGCAACTATGGTGCGCCTGAGACTAATGTGTCTGCACGAGAAGCCTTGGAGTTAAGCAGTCAGCAGGAGTATTTGAAGCTGAAGGCACGTTATGAAGCATTACAACGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTGAGCAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTAGATTCATCCTTGAAGCAAATAAGATCCACAAGGACCCAATACATGCTGGATCAGCTCTCTGATCTTCAACGCAAGGAACATATGCTAAGCGAGGCTAACAGGTCTCTAAGACAAAGGCAGTTGGAAGGGTATCAATTGAATCAACTCCAAATGAATGCATGTGTTGAAGAAATGGGCTATGGTCGGCATCCAAGTCAAGCTCAGGGTGATGGTCTCTATCAACAATTGGAGTGTGAACCAACTTTACAAATTGGCAACTATCAGCCCGATCCAGGGTCAGTGGTCTGTACGGCAGGCCCAAGCATGAGTAATTACATGGGAGGATGGTTACCATAA 819 0.4298 MINHYEAYDPCSTSSNVSKQWKRMKEMKMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNVSAREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQYMLDQLSDLQRKEHMLSEANRSLRQRQLEGYQLNQLQMNACVEEMGYGRHPSQAQGDGLYQQLECEPTLQIGNYQPDPGSVVCTAGPSMSNYMGGWLP* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g4215 272 ProSiteProfiles K-box domain profile. 117 213 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal7g4215 272 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 29 252 - -
Mal7g4215 272 Coils Coil 154 174 - -
Mal7g4215 272 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 38 85 IPR002100 GO:0003677|GO:0046983
Mal7g4215 272 Pfam K-box region 119 200 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal7g4215 272 CDD MADS_MEF2_like 30 104 IPR033896 GO:0000977|GO:0045944
Mal7g4215 272 PRINTS MADS domain signature 51 66 IPR002100 GO:0003677|GO:0046983
Mal7g4215 272 PRINTS MADS domain signature 31 51 IPR002100 GO:0003677|GO:0046983
Mal7g4215 272 PRINTS MADS domain signature 66 87 IPR002100 GO:0003677|GO:0046983
Mal7g4215 272 ProSitePatterns MADS-box domain signature. 31 85 IPR002100 GO:0003677|GO:0046983
Mal7g4215 272 Gene3D - 41 111 IPR036879 GO:0003677|GO:0046983
Mal7g4215 272 SUPERFAMILY SRF-like 30 105 IPR036879 GO:0003677|GO:0046983
Mal7g4215 272 SMART madsneu2 29 88 IPR002100 GO:0003677|GO:0046983
Mal7g4215 272 Coils Coil 180 200 - -
Mal7g4215 272 ProSiteProfiles MADS-box domain profile. 29 89 IPR002100 GO:0003677|GO:0046983
Mal7g4215 272 PANTHER SERUM RESPONSE FACTOR HOMOLOG 29 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g4215 Mal-Chr7 109111875 109118496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g4215 29 272 MADS-box Gene Family AT1G24260 72.289 6.36e-112 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal7g4215 K-box 3.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g4215 - - gmx:100805078 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g4215 7 109111875 109118496 Mal7g4215 7 109111875 109118496 ECH