Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g4189 ATGGTTAAGTACTCAAGAGAGCCTGATAACCCTACCAAGTCCACCAAGGCTAGGGGTGCTGATCTGAGAGTTCATTTCAAGAACACTAGGGAAACTGCCTTTGCCATCAGGAAGTTGCCCTTGATCAAGGCTAAAAGGTACTTGGAAGACGTTCTTGCACACAAACAGGCCATTCCATTCAGACGTTTTTGTCGTGGTGTTGGGAGGACAGCCCAGGCCAAGAATAGGCACTCTAATGGGCAAGGAAGGTGGCCTGTCAAATCAGCCAAGTTTATTTTGGATTTGTTGAAGAATGCAGAGAGTAATGCCGAGGTGAAAGGCTTGGATGTTGATGCTCTATATGTGTCTCATATCCAAGTCAACCAGGCGCAGAAGCAGCGCCGTCGAACATACAGAGCCCATGGAAGAATCAACCCTTACATGTCATCTCCTTGCCACATTGAGTTGATATTATCTGAAAAGGAAGAGTCTGTCCAGAAGGAGCCCGAGACCCAATTGGCAACAAACAAGAAGAAAGCTTAA 522 0.4655 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFAIRKLPLIKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEESVQKEPETQLATNKKKA* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g4189 173 CDD Ribosomal_L22 16 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Mal7g4189 173 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Mal7g4189 173 PANTHER 60S RIBOSOMAL PROTEIN L17-1 ISOFORM X1 1 172 - -
Mal7g4189 173 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Mal7g4189 173 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Mal7g4189 173 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Mal7g4189 173 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Mal7g4189 173 PANTHER 60S RIBOSOMAL PROTEIN L17 1 172 IPR005721 GO:0003735|GO:0006412|GO:0015934
Mal7g4189 173 Gene3D Ribosomal protein L22/L17 1 173 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g4189 Mal-Chr7 108776007 108779309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g4189 1 173 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 88.439 5.85e-115 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g4189 K02880 - gmx:100499784 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g4189 7 108776007 108779309 Mal7g4189 7 108776007 108779309 ECH