Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g4171 ATGATGGATGCTGCCGCTGAGGTTGAAGAAAATCTATTTGCTGTTAGTGATGCCAAGTTACATGGACAAATGTGCAAGGCTCTTTCTATAATATATTGCAAAGTATTGTCAATATTTCCTTCTTTAGAAGCTGCTAGGCCTAGGAGTAAAACTGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTGGAGAAAGCCAAGAATGTTCTTCATCATTGCTCAGTGTGTAGTAAACTTTACCTGGCTGTAACTGGGGACTCCGTTCTCCTGAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTCAGACGGGTGGAAGATATTGTTCCACAATCCATTGGATGTCAGGTTCAGGAGATTGTGAATGAATTTGCAGATGTAGAATTTGCACTTGACCCCTTAGAGAAGCAAGTTGGCGATGATTTAATTGCATTGCTCCAGCAGGGAAAAAAGTTTGATGATGATGGTGAAAGTTATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATCACATCTTCAAGAGTAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAACTTATTGACAGGGCTCGGGCTGAGGAAGACAAAAGAAAGGAATCAATTGTTGCATATCTTTTGCATCTTATGAGGAAATACTCCAAGTTATTCAGAAATGAGTTTTCAGATGACACTGATTCTCAGGGTTCTGGTCCTTGTTCTCCCACTGTTCAGGGACCTATTGAGGATGGTGTTCCCTTTGGTCATAATCAGGCCTTTGAAAAACAACTTTCAAAACTTAGTTCCTTTAATTTCAAGCCAAATAATAATATGGAGCCGGGGCAGATGGCTCTACCACCGGAAGAGTTAAGGTGTCCAATATCTCTTCAACTTATGTATGATCCTGTTATCATTGCTTCTGGGCAAACATATGAAAAGGTTTGCATAGAGAAATGGTTTGGTGATGGGCACAGCAACTGCCCAAAGACCCAACAAAACCTTCCACATCTTTACTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAATTCCTATTCCTGAAGGCCCTCCTGAATCACTTGATCTTAACTACTGGAGATTGGTATTATCAGAGTCTGAGTCTACAAATCCAAGATCTGTAAATAGTGTCAGCTCTTGCAAGTTGAAGGGTGTCAAAGTGGTTCCTTTAGAAGAGAGTTGCATCTCAGAGGAATATGTGGAAAATGGAGCTGAAAGTACATCTGCACAAGAGGAAGACACTGAGCAGTATCTTAGTTTTCTGAAAGTCTTGACTGAGGGGAACAATTGGGAGAGGAAATATGAAGTGGTAGAACAGTTAAGGCTGATGCTGAGGGATGATGAGGAAGCTAGGATTTTTATGGGGGCTAATGGGTTTGTTCAAGCACTTGTTCAGTTTTTACAATCGGCTTTACATGAAAAGAATTTGATGGCTCAGGAAAGCGGAGCAATGGCTCTTTTCAACCTAGCTGTGAATAACGACAGAAATAAGGAGATTATGTTATCAGCTGGAGTTTTGTCTTTGTTGGAGGAAATGATTTCTAACAGTAGTTCGTATGGTTGTGCAACTGCTCTATATCTGAATCTCTCTTGCCTCGAAGAAGCCAAACCTATGATTGGCATGAGTCAGGCTGTACAGTTCCTAACCCAGCTCCTTCAATCTGACTATGACATTCAATACAAGCAAGATTCTCTCCATGCTCTTTATAATCTTTCTACCTTGCCTTCCAATATTCCATACTTACTTTCATCTGGCATTGTTAACGGCCTACAATCCCTTCTTGTAGACCAGGGTGATGATTGTACATGGACAGAAAAATGCATAGCAGTTTTGATAAATTTAGCCACTTCTGAAGTTGGAAGGGAGGAAATGGTATCAAATCCTGGACTCATCAGTGCATTGGCTTCCATATTGGACACTGAGGAGCTCGAAGTGCAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTGTGCAACAGAAGTGAGCAATGTTCTGACATGGTCCTACAAGAAGGGGTTATACCTGCGTTGGTATCAATATCAGTGAATGGGACCCCAAGAGGGAGAGAAAAAGCTCAGAAACTCTTGATGCTGTTCCGACAGCAACGACGGGATGAATCACCTGTTGAGGCACACCAGTGTCCTCCTGAAACTAGTGATCTGTCTGTGCCACCTGCTGAAATGAAACCTCTATGTAAGTCGATGTCTAGAAGAAAGACCGGTAAACCTTTTAGCTTTTTCTGGAGAAGCAAGAGCTATTCTGTGTACCAGTGTTGA 2304 0.4167 MMDAAAEVEENLFAVSDAKLHGQMCKALSIIYCKVLSIFPSLEAARPRSKTGIQALCSLHVALEKAKNVLHHCSVCSKLYLAVTGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFADVEFALDPLEKQVGDDLIALLQQGKKFDDDGESYELESFHQAATRLGITSSRVALAERRALKKLIDRARAEEDKRKESIVAYLLHLMRKYSKLFRNEFSDDTDSQGSGPCSPTVQGPIEDGVPFGHNQAFEKQLSKLSSFNFKPNNNMEPGQMALPPEELRCPISLQLMYDPVIIASGQTYEKVCIEKWFGDGHSNCPKTQQNLPHLYLTPNYCVKGLVASWCEQNGIPIPEGPPESLDLNYWRLVLSESESTNPRSVNSVSSCKLKGVKVVPLEESCISEEYVENGAESTSAQEEDTEQYLSFLKVLTEGNNWERKYEVVEQLRLMLRDDEEARIFMGANGFVQALVQFLQSALHEKNLMAQESGAMALFNLAVNNDRNKEIMLSAGVLSLLEEMISNSSSYGCATALYLNLSCLEEAKPMIGMSQAVQFLTQLLQSDYDIQYKQDSLHALYNLSTLPSNIPYLLSSGIVNGLQSLLVDQGDDCTWTEKCIAVLINLATSEVGREEMVSNPGLISALASILDTEELEVQEQAVSCLLILCNRSEQCSDMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFRQQRRDESPVEAHQCPPETSDLSVPPAEMKPLCKSMSRRKTGKPFSFFWRSKSYSVYQC* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g4171 767 Gene3D - 405 718 IPR011989 -
Mal7g4171 767 CDD RING-Ubox_PUB 286 328 IPR045210 -
Mal7g4171 767 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 514 IPR000225 GO:0005515
Mal7g4171 767 MobiDBLite consensus disorder prediction 715 735 - -
Mal7g4171 767 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Mal7g4171 767 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Mal7g4171 767 Pfam U-box domain 283 352 IPR003613 GO:0004842|GO:0016567
Mal7g4171 767 SUPERFAMILY ARM repeat 430 710 IPR016024 -
Mal7g4171 767 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 759 - -
Mal7g4171 767 PANTHER U BOX DOMAIN-CONTAINING 2 759 - -
Mal7g4171 767 SMART arm_5 502 541 IPR000225 GO:0005515
Mal7g4171 767 SMART arm_5 542 583 IPR000225 GO:0005515
Mal7g4171 767 SMART arm_5 457 501 IPR000225 GO:0005515
Mal7g4171 767 SMART arm_5 626 668 IPR000225 GO:0005515
Mal7g4171 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 355 IPR013083 -
Mal7g4171 767 SUPERFAMILY RING/U-box 279 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g4171 Mal-Chr7 108518255 108522101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g4171 2 766 U-box Gene Family AT1G24330 65.256 0.0 1006