LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal7g4162	ATGGAATTTGATTCCGATTCAGATTCCGACGGATCTCACATCTCCACAACTCCACCAAGACAACAACCAAAACCACCACTTCCAGTTTCCACCAAAAAATCCAAATCCAAATCCAAAATCAAAACCAAACCCCCAAAATCCAATAAACCCCCCGAAACTCTTCCCGAACTAGATTCTTTCCCATTCCCTTCCATCCCTTCCGTTCCTTTCAACATCCGACAACGAACATCCGATGCTCCTTCAACTTCATCTTCTCACCACTCCATCGAAACCCTCCCTGCCGGATTCTTCTCCAAATCAATTTCATTCTCGAGAATTCGTAAACCGTTACTCAATCTAGAACATCTAGAACCTTCCGAAGCCGAACCAGTTCTTAATTCCCCCAAAACCGTCGTGAAATCCGCGAAGAAACATCCTAATTTGATAGGTGCTACTAGTGTGGCAATTCCGGTAAAGAAGGTACTAAGAGGTGCCGGAGAAGGAAATTTTGTGAAATTGAATTTAAATGGTAAGAGAAAGAAGTTTTTGAATAAAGGGTGGAAGAAAAATGGAAAATTTGGTAGTGGTAAAAGGTATAGAAGAGGTGGTTATAGTAGTAATAGTAGTAGTAGAAGTAAAAGTAAGAAATCGGAACACGAAGAAGGCAATGATGAGGAGGAAGAGGAGGATGGTTTTGGTGTAGAGAATGCAAAGCAACAGGAAAAGCAAAATGGTTGGGAAAATGAATGCCACGTGTTGGAGGAGGCTGTGTTAGCAGCAAGAGAGGAAGCTTCTGATGAGAATTTGGTGAAGTTGTTGAAATTGATTCATGGTTTTGATTCTTTTCGAGAGGGGCAGCTTGAGGCGGTTAAGAATGTTCTTGCTGGGAAGTCGACGATGCTTATATTGCCGACTGGTGCAGGGAAGTCGTTGTGTTATCAGTTGAGTGCATTAATTATGCCCGGGATTACGCTTGTTGTTTGTCCTTTGGTTGCTTTGATGATTGATCAGCTTCGGCAATTGCCTCCGCTTATTTCGGGTGCTCTCCTAAGCAGTGCTCAGACATTTGAAGAATCCTCTGAAACGCTCAACCAGCTTCGGCAAGGCACAATAAAGGTGCTTTTTGTTTCACCAGAGCGATTCTTGAATGAGGAATTTCTGTCTGTTATCTCTGCTGGGTTAGCTGTCTCACTCGTTGTTATTGATGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTACTTCATAAGAGTCTTAATGTAGGTTCTGTTCTTGCAATGACAGCAACTGCTACAACCACGACTTTAGATGCCATTATGTCTGCCCTGGATATTCCTTGCACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGCGTTTGTCGGTGTCTATGATAAAAAATAGAATGAAAGACCTACTGGTTCTGATGAAGTCTTCTCCTTTCGCGGAAGTTAAAAGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATTAGCAGATATTTGAATGATAACAATATCAAGGCAAAGAGTTACCATAGTGGTATTTCTGCAAAGGAACGTGGCTACGTACAGGAGTTGTTTGGTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCTGGAAGGGATGGGAGGTTGTCGTATTGTCACCTATTTTATGATGATGAGATGTATTTCAAACTTCGTAGTCTAATGTACAGTGAAGGAGTAGATGAATATGCAGTGAATAAATTTCTGTCTGAAGTGTTTCCTGCTGACAAAAGCTCCTGTGGGAAAATCTGTTCGCTGATCAAAGAATCTGCTTCACGCAGGTTTGATATGAAAGAAGAGGTGATTCTCACAGTTTTGACACGCTTGGAGCTGGGTGATGTGCAGTACTTACATTTACTTCCACAGACAAATGCTACTTGTGTTCTGAATTTTCATATGACTCCGGCTGTGTCCCTTGCCCAAAAGGTTTCTGTTATTGCTGTAATTCTGAAAAGATCTGAAAATAAGCATGGACAATATACTTTTGATATTCCAACTGTGGCAAATGACATGGGGGTCACACCAGTTGAATTAACAAATCAGTTGTATGACCTAAAGTTGAAGGGAGAAATAACTTATGAAATGAAGGACATGGCCTACTGTTATAGGATTCTTGAAGGCCCAACAGACTTTTTTTCTCTATCGGCAGATATTACACGATGGTTATCTGAAGTTGAAAGTTGTAAGGTACGAAAAATGGATGCTATGTTTAATGCTGCATATTTTGCAGTAAATCTGTGTGATAAGATGAACGGTTGCAGTAGTGCTGATCACACTTCATGCTTGCAAAGGATAATATTGGATTACTTTGCTGGAGTTGATAGTACTGATTTCTGCAAGAAAATCGATCAAAGCAGTCCTTTCCTACGGGCAGATATAAAGGTCTTTCTACAGAGCAATTCACATGCTCGCTTTACACCAAGAGCTGTTGCGAGGGTAATGCACGGAATTGCAAGCCCAGCCTACCCTTATACAATATGGGGTAAAACCCATTTCTGGGGAAGGTATACCAAGATAGACTTTAAGGTGGTGATGGAAGCAGCAAAGGCAGAACTTAAAAATTTTATTGGAAAAGATTTACTCTAG	2739	0.4085	MEFDSDSDSDGSHISTTPPRQQPKPPLPVSTKKSKSKSKIKTKPPKSNKPPETLPELDSFPFPSIPSVPFNIRQRTSDAPSTSSSHHSIETLPAGFFSKSISFSRIRKPLLNLEHLEPSEAEPVLNSPKTVVKSAKKHPNLIGATSVAIPVKKVLRGAGEGNFVKLNLNGKRKKFLNKGWKKNGKFGSGKRYRRGGYSSNSSSRSKSKKSEHEEGNDEEEEEDGFGVENAKQQEKQNGWENECHVLEEAVLAAREEASDENLVKLLKLIHGFDSFREGQLEAVKNVLAGKSTMLILPTGAGKSLCYQLSALIMPGITLVVCPLVALMIDQLRQLPPLISGALLSSAQTFEESSETLNQLRQGTIKVLFVSPERFLNEEFLSVISAGLAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHKSLNVGSVLAMTATATTTTLDAIMSALDIPCTNLIQNAHLRDNLRLSVSMIKNRMKDLLVLMKSSPFAEVKSIIVYCKFQSETDQISRYLNDNNIKAKSYHSGISAKERGYVQELFGSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPGSLEEYVQEIGRAGRDGRLSYCHLFYDDEMYFKLRSLMYSEGVDEYAVNKFLSEVFPADKSSCGKICSLIKESASRRFDMKEEVILTVLTRLELGDVQYLHLLPQTNATCVLNFHMTPAVSLAQKVSVIAVILKRSENKHGQYTFDIPTVANDMGVTPVELTNQLYDLKLKGEITYEMKDMAYCYRILEGPTDFFSLSADITRWLSEVESCKVRKMDAMFNAAYFAVNLCDKMNGCSSADHTSCLQRIILDYFAGVDSTDFCKKIDQSSPFLRADIKVFLQSNSHARFTPRAVARVMHGIASPAYPYTIWGKTHFWGRYTKIDFKVVMEAAKAELKNFIGKDLL*	913

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal7g4162	912	SMART	helicmild6	504	585	IPR001650	-
	Mal7g4162	912	MobiDBLite	consensus disorder prediction	1	89	-	-
	Mal7g4162	912	CDD	SF2_C_RecQ	461	594	-	-
	Mal7g4162	912	Gene3D	-	460	652	IPR027417	-
	Mal7g4162	912	Gene3D	-	245	452	IPR027417	-
	Mal7g4162	912	PANTHER	DNA HELICASE RECQ FAMILY MEMBER	47	835	-	-
	Mal7g4162	912	Pfam	Helicase conserved C-terminal domain	489	584	IPR001650	-
	Mal7g4162	912	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	315	597	IPR027417	-
	Mal7g4162	912	SMART	ultradead3	271	469	IPR014001	-
	Mal7g4162	912	MobiDBLite	consensus disorder prediction	69	89	-	-
	Mal7g4162	912	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	474	624	IPR001650	-
	Mal7g4162	912	ProSitePatterns	DEAH-box subfamily ATP-dependent helicases signature.	390	399	IPR002464	-
	Mal7g4162	912	PANTHER	ATP-DEPENDENT DNA HELICASE Q4	47	835	-	-
	Mal7g4162	912	MobiDBLite	consensus disorder prediction	179	238	-	-
	Mal7g4162	912	TIGRFAM	recQ_fam: ATP-dependent DNA helicase, RecQ family	265	622	IPR004589	GO:0004386\|GO:0006310
	Mal7g4162	912	Pfam	DEAD/DEAH box helicase	278	439	IPR011545	GO:0003676\|GO:0005524
	Mal7g4162	912	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	283	453	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal7g4162	Mal-Chr7	108417484	108424769	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal7g4162	490	617	Eukaryotic Initiation Factors Gene Family	AT3G19760	30.000	5.14e-13	70.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal7g4162	K10730		-	gmx:100811214	1177.16